Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27025 Trifolium pratense HOM05D003093 ORTHO05D410825 3.2e-71 271.6 129 100.0
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 9.2e-10 67.4 49 67.3
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.6e-09 66.6 49 67.3
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.5e-09 65.5 49 65.3
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 7.8e-09 64.3 49 67.3
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 7.8e-09 64.3 49 65.3
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 7.8e-09 64.3 49 65.3
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.0e-08 63.9 49 63.3
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.3e-08 63.5 41 70.7
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-08 63.5 41 70.7
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-08 63.5 41 68.3
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 2.3e-08 62.8 49 65.3
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 2.3e-08 62.8 41 70.7
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 3.0e-08 62.4 41 70.7
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 3.9e-08 62.0 49 63.3
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 5.0e-08 61.6 41 68.3
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 8.6e-08 60.8 42 66.7
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 8.6e-08 60.8 53 56.6
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.5e-07 60.1 41 65.9
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.5e-07 60.1 41 65.9
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.5e-07 60.1 49 63.3
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 1.9e-07 59.7 38 71.1
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 2.5e-07 59.3 40 70.0
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 2.5e-07 59.3 41 61.0
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.3e-07 58.9 41 61.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 3.3e-07 58.9 41 63.4
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 3.3e-07 58.9 41 68.3
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.3e-07 58.5 41 63.4
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.3e-07 58.5 41 63.4
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.3e-07 58.5 41 63.4
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.3e-07 58.5 41 63.4
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 4.3e-07 58.5 49 55.1
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 4.3e-07 58.5 39 69.2
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 7.3e-07 57.8 41 58.5
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 7.3e-07 57.8 41 61.0
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 9.5e-07 57.4 41 61.0
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 9.5e-07 57.4 41 65.9
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 9.5e-07 57.4 49 59.2
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 9.5e-07 57.4 41 61.0
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 9.5e-07 57.4 41 61.0
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.2e-06 57.0 49 59.2
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.2e-06 57.0 41 65.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.6e-06 56.6 41 63.4
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.6e-06 56.6 41 63.4
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.6e-06 56.6 41 58.5
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.1e-06 56.2 49 55.1
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.1e-06 56.2 49 55.1
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.1e-06 56.2 41 58.5
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.1e-06 56.2 41 61.0
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.1e-06 56.2 39 69.2
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.8e-06 55.8 42 64.3
Ca_01421_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
Migut.D02205 Erythranthe guttata HOM05D000140 ORTHO05D000087 2.8e-06 55.8 30 70.0
Glyma.11G147900 Glycine max HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
Lj3g0004111 Lotus japonicus HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
Lalb_Chr14g0374721 Lupinus albus HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
PGR119G1179 Punica granatum HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
TPR.G11594 Trifolium pratense HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
VMungo1127G0469 Vigna mungo HOM05D000140 ORTHO05D000087 2.8e-06 55.8 27 92.6
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 3.6e-06 55.5 41 61.0
Phvul.005G135933 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 3.6e-06 55.5 27 88.9
Phvul.011G077600 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 3.6e-06 55.5 27 88.9
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.6e-06 55.5 41 58.5
VMungo1080G1406 Vigna mungo HOM05D000140 ORTHO05D000087 3.6e-06 55.5 27 88.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 4.7e-06 55.1 41 61.0
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 4.7e-06 55.1 41 56.1
Os12g0429200 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D000087 4.7e-06 55.1 34 73.5
arahy.Tifrunner.gnm1.ann1.8F194T Arachis hypogaea HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
arahy.Tifrunner.gnm1.ann1.XY3DS6 Arachis hypogaea HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 6.2e-06 54.7 41 58.5
Psat5g277880 Pisum sativum HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
Psat7g224360 Pisum sativum HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
Psat7g224640 Pisum sativum HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
VMungo1127G0412 Vigna mungo HOM05D000140 ORTHO05D000087 6.2e-06 54.7 27 88.9
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.1e-06 54.3 49 55.1
Cfa011332 Carpinus fangiana HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 81.5
Cfa011334 Carpinus fangiana HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 81.5
Haze_23867 Corylus avellana HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 81.5
Haze_23868 Corylus avellana HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 81.5
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 8.1e-06 54.3 41 58.5
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 8.1e-06 54.3 41 58.5
Glyma.11G156722 Glycine max HOM05D000140 ORTHO05D000087 8.1e-06 54.3 26 92.3
Glyma.12G173700 Glycine max HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 88.9
Glyma.13G327000 Glycine max HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 88.9
Lj3g0011131 Lotus japonicus HOM05D000140 ORTHO05D000087 8.1e-06 54.3 26 92.3
Lj3g0011147 Lotus japonicus HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 88.9
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 8.1e-06 54.3 41 58.5
Medtr2g094020 Medicago truncatula HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 85.2
Medtr4g059680 Medicago truncatula HOM05D000140 ORTHO05D000087 8.1e-06 54.3 26 92.3
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 8.1e-06 54.3 42 57.1
TPR.G15562 Trifolium pratense HOM05D000140 ORTHO05D000087 8.1e-06 54.3 27 85.2


User provided reference genes

Program Settings