Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 2339.3 1364 100.0
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 2038.5 1367 85.1
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 2022.3 1367 83.0
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 2010.0 1371 83.8
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1751.9 1375 71.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1746.9 1369 73.8
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1738.8 1375 71.1
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1728.4 1375 69.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1712.2 1373 70.5
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1701.4 1397 68.8
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1670.6 1437 67.1
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1530.4 1312 65.9
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1517.7 1402 60.3
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1516.9 1394 61.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1510.4 1393 60.7
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1504.6 1403 61.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1471.8 1400 59.8
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1449.1 1396 58.3
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1444.5 1398 58.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1444.5 1394 58.0
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1439.9 1396 58.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1437.9 1392 58.4
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1431.8 1402 58.4
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1428.7 1394 57.7
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1412.9 1390 56.7
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1411.0 1400 56.3
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1407.9 1381 58.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1405.2 1392 58.3
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1396.7 1396 56.9
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1395.9 1396 56.9
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1392.9 1395 56.5
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1392.5 1390 56.9
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1392.1 1397 56.3
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1390.6 1390 57.5
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1388.2 1430 55.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1381.7 1401 56.0
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1378.2 1392 56.0
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1370.9 1405 55.5
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1361.3 1420 55.4
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1359.4 1398 54.2
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1355.1 1390 56.0
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1353.6 1380 55.9
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1353.2 1390 56.0
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1347.0 1384 54.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1342.8 1386 55.0
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1335.1 1386 55.0
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1329.3 1402 56.3
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1328.2 1412 54.2
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1324.3 1395 53.5
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1317.8 1400 55.7
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1313.1 1406 55.4
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1309.3 1365 54.9
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1308.9 1400 55.8
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1308.1 1390 54.2
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1307.4 1223 58.2
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1302.3 1396 53.4
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1300.8 1392 53.0
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1283.1 1389 53.6
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1281.9 1322 56.3
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1271.5 1225 56.8
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1266.1 1394 52.8
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1262.3 1368 53.1
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1261.1 1225 56.7
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1259.2 1394 52.4
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1258.4 1225 57.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1257.7 1388 52.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1256.1 1398 54.1
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1255.0 1226 56.5
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1253.8 1390 52.6
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1253.8 1390 52.7
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1250.3 1351 53.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1250.3 1356 52.5
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1248.8 1382 52.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1248.0 1388 51.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1247.3 1423 52.1
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1247.3 1355 53.2
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1245.3 1396 52.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1245.3 1393 51.3
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1239.6 1399 52.4
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1234.2 1334 55.1
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1228.0 1388 52.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1218.0 1399 50.8
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1214.1 1273 53.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1213.0 1391 52.9
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1208.4 1384 51.4
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1189.1 1223 54.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1159.1 1401 50.1
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1144.0 1104 58.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1140.6 1091 57.4
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1132.1 1102 56.8
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1112.1 984 62.7
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1102.0 1101 55.9
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1099.3 1410 47.7
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1097.4 1097 61.0
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1090.1 1449 48.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.4e-310 1069.3 974 60.4
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 3.4e-304 1048.9 1104 54.3
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 1.3e-303 1047.0 1406 47.3
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.5e-301 1038.9 1398 46.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.5e-280 970.3 1018 53.7
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.6e-277 958.7 1230 47.2
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.1e-273 946.0 1158 49.4
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 7.6e-272 941.4 1374 42.5
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 7.1e-270 934.9 1225 46.6
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.9e-253 878.2 759 61.8
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.5e-235 820.8 989 48.9
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.1e-229 800.4 717 60.0
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.8e-227 791.6 1211 43.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 3.1e-225 786.6 1053 44.6
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.5e-219 767.7 819 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.7e-219 765.8 1222 41.2
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 5.6e-214 749.2 1155 41.4
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 2.1e-192 677.6 796 49.9
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 5.2e-188 662.9 1278 36.4
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.0e-184 649.4 874 45.8
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.9e-182 644.4 503 68.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 4.5e-171 606.7 405 81.7
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.8e-165 587.4 457 69.1
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 4.6e-152 543.5 933 38.6
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.6e-139 501.1 409 67.7
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 5.1e-135 486.9 1022 33.5
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 2.0e-123 448.4 680 42.2
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 2.8e-109 401.4 345 65.8
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.5e-105 388.3 296 69.3
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-94 352.4 328 57.3
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.5e-81 309.3 365 52.1
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.4e-79 302.8 278 64.0
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.3e-74 285.4 434 42.2
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 1.7e-69 269.2 919 28.1
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 6.4e-61 240.7 355 40.6
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.9e-49 202.6 610 33.4
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.2e-46 193.4 228 51.3
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 2.1e-35 156.0 113 67.3
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.1e-34 151.4 232 41.8
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-30 140.2 106 67.9
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 1.3e-29 136.7 91 79.1
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.5e-28 132.5 82 80.5
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.0e-26 127.1 113 59.3
Medtr6g046230 Medicago truncatula HOM05D000076 ORTHO05D264292 2.5e-25 122.5 74 82.4
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.7e-25 120.6 194 43.3
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.1e-23 117.1 87 64.4
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.8e-23 116.3 114 53.5
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 5.3e-23 114.8 193 35.2
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.0e-13 84.0 81 55.6
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-13 83.6 81 53.1
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-13 83.6 81 53.1
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.2e-12 79.0 71 57.7
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 8.8e-10 70.9 89 46.1
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.0e-09 69.7 50 70.0
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.1e-07 62.4 66 53.0
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.2e-06 60.5 150 28.7
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.6e-06 59.3 62 51.6
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 4.5e-06 58.5 150 27.3
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 4.5e-06 58.5 150 27.3
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 4.5e-06 58.5 150 26.7
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 5.9e-06 58.2 51 62.7


User provided reference genes

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