Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26707 Trifolium pratense HOM05D000095 ORTHO05D000393 2.0e-32 142.5 113 100.0
Medtr5g037080 Medicago truncatula HOM05D000095 ORTHO05D000393 1.4e-25 119.8 112 61.6
Psat2g116440 Pisum sativum HOM05D000095 ORTHO05D000393 1.4e-25 119.8 112 61.6
Ca_15202_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000393 1.3e-23 113.2 112 67.9
arahy.Tifrunner.gnm1.ann1.2UA6GC Arachis hypogaea HOM05D000095 ORTHO05D000393 5.9e-21 104.4 114 55.3
arahy.Tifrunner.gnm1.ann1.L85IH5 Arachis hypogaea HOM05D000095 ORTHO05D000393 5.9e-21 104.4 114 55.3
Lalb_Chr05g0217371 Lupinus albus HOM05D000095 ORTHO05D000393 1.0e-20 103.6 110 54.5
Lalb_Chr09g0326611 Lupinus albus HOM05D000095 ORTHO05D000393 1.1e-19 100.1 110 51.8
PGR119G1717 Punica granatum HOM05D000095 ORTHO05D000393 2.5e-19 99.0 110 53.6
VMungo1215G2761 Vigna mungo HOM05D000095 ORTHO05D000393 5.6e-19 97.8 110 52.7
Phvul.002G078600 Phaseolus vulgaris HOM05D000095 ORTHO05D000393 1.6e-18 96.3 110 51.8
Cfa009079 Carpinus fangiana HOM05D000095 ORTHO05D000393 1.1e-17 93.6 110 55.5
Duzib251G0069 Durio zibethinus HOM05D000095 ORTHO05D000393 1.1e-17 93.6 110 60.0
GSVIVG01020132001 Vitis vinifera HOM05D000095 ORTHO05D000393 1.8e-17 92.8 110 53.6
Haze_12111 Corylus avellana HOM05D000095 ORTHO05D000393 2.3e-17 92.4 110 53.6
Glyma.02G026300 Glycine max HOM05D000095 ORTHO05D000393 2.3e-17 92.4 110 50.9
CiPaw.05G143900 Carya illinoinensis HOM05D000095 ORTHO05D000393 4.0e-17 91.7 110 53.6
CANSAT01G0205 Cannabis sativa HOM05D000095 ORTHO05D000393 5.2e-17 91.3 111 48.6
Ciclev10032167m.g Citrus clementina HOM05D000095 ORTHO05D000393 5.2e-17 91.3 110 50.9
Eucgr.B02575 Eucalyptus grandis HOM05D000095 ORTHO05D000393 6.8e-17 90.9 112 57.1
RcHm_v2.0_Chr4g0444961 Rosa chinensis HOM05D000095 ORTHO05D000393 6.8e-17 90.9 110 51.8
COL.COLO4_36264 Corchorus olitorius HOM05D000095 ORTHO05D000393 1.2e-16 90.1 119 58.0
FvH4_4g35340 Fragaria vesca HOM05D000095 ORTHO05D000393 1.5e-16 89.7 110 51.8
FAN07G1738 Fragaria x ananassa HOM05D000095 ORTHO05D000393 1.5e-16 89.7 110 51.8
FAN12G1384 Fragaria x ananassa HOM05D000095 ORTHO05D000393 1.5e-16 89.7 110 51.8
FAN17G1563 Fragaria x ananassa HOM05D000095 ORTHO05D000393 1.5e-16 89.7 110 51.8
MD16G1083300 Malus domestica HOM05D000095 ORTHO05D000393 1.5e-16 89.7 111 51.4
Thecc.02G238000 Theobroma cacao HOM05D000095 ORTHO05D000393 2.6e-16 89.0 110 51.8
Cpa.g.sc5.314 Carica papaya HOM05D000095 ORTHO05D000393 3.4e-16 88.6 115 49.6
Manes.01G194000 Manihot esculenta HOM05D000095 ORTHO05D000393 3.4e-16 88.6 112 48.2
Ca_15201_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000393 7.5e-16 87.4 111 46.8
ClCG05G024870 Citrullus lanatus HOM05D000095 ORTHO05D000393 9.8e-16 87.0 112 49.1
Glyma.01G038600 Glycine max HOM05D000095 ORTHO05D000393 9.8e-16 87.0 110 50.0
CsaV3_5G032040 Cucumis sativus L. HOM05D000095 ORTHO05D000393 1.3e-15 86.7 113 50.4
Prupe.1G262700 Prunus persica HOM05D000095 ORTHO05D000393 1.3e-15 86.7 110 50.0
MELO3C012039.2 Cucumis melo HOM05D000095 ORTHO05D000393 1.7e-15 86.3 113 49.6
Potri.010G039233 Populus trichocarpa HOM05D000095 ORTHO05D000393 2.2e-15 85.9 110 48.2
Sabra08G0145300 Salix brachista HOM05D000095 ORTHO05D000393 2.9e-15 85.5 109 48.6
Aa31LG4G10870 Aethionema arabicum HOM05D000095 ORTHO05D000393 3.7e-15 85.1 110 49.1
QL03p067524 Quercus lobata HOM05D000095 ORTHO05D000393 3.7e-15 85.1 118 50.8
MD13G1084100 Malus domestica HOM05D000095 ORTHO05D000393 4.9e-15 84.7 110 47.3
FAN22G1950 Fragaria x ananassa HOM05D000095 ORTHO05D000393 6.4e-15 84.3 110 50.0
Atru.chr11.1921 Acer truncatum HOM05D000095 ORTHO05D000393 8.3e-15 84.0 118 50.8
CSS0042242 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 8.3e-15 84.0 112 50.0
CARHR063100 Cardamine hirsuta HOM05D000095 ORTHO05D000393 1.4e-14 83.2 110 46.4
Potri.008G191800 Populus trichocarpa HOM05D000095 ORTHO05D000393 1.9e-14 82.8 111 46.8
Dinv24930 Davidia involucrata HOM05D000095 ORTHO05D000393 2.4e-14 82.4 111 48.6
Lj2g0017688 Lotus japonicus HOM05D000095 ORTHO05D000393 3.2e-14 82.0 112 46.4
AT1G70000 Arabidopsis thaliana HOM05D000095 ORTHO05D000393 5.4e-14 81.3 112 46.4
Dinv31142 Davidia involucrata HOM05D000095 ORTHO05D000393 5.4e-14 81.3 115 53.0
Duzib248G0490 Durio zibethinus HOM05D000095 ORTHO05D000393 5.4e-14 81.3 112 48.2
BcaB03g15523 Brassica carinata HOM05D000095 ORTHO05D000393 1.6e-13 79.7 110 45.5
Gohir.D11G341900 Gossypium hirsutum HOM05D000095 ORTHO05D000393 2.0e-13 79.3 118 50.0
Gorai.007G371900 Gossypium raimondii HOM05D000095 ORTHO05D000393 2.0e-13 79.3 118 50.0
Gohir.A11G322800 Gossypium hirsutum HOM05D000095 ORTHO05D000393 7.8e-13 77.4 118 54.2
Rhsim12G0127100 Rhododendron simsii HOM05D000095 ORTHO05D000393 7.8e-13 77.4 112 45.5
vmacro16303 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 7.8e-13 77.4 111 52.3
BcaC03g15151 Brassica carinata HOM05D000095 ORTHO05D000393 1.0e-12 77.0 110 44.5
A02p16290 Brassica napus HOM05D000095 ORTHO05D000393 1.0e-12 77.0 110 44.5
C02p27110 Brassica napus HOM05D000095 ORTHO05D000393 1.0e-12 77.0 110 44.5
BolC2t08775H Brassica oleracea HOM05D000095 ORTHO05D000393 1.0e-12 77.0 110 44.5
BraA02t06687Z Brassica rapa HOM05D000095 ORTHO05D000393 1.0e-12 77.0 110 44.5
Sp5g25110 Schrenkiella parvula HOM05D000095 ORTHO05D000393 1.0e-12 77.0 111 44.1
AL2G29240 Arabidopsis lyrata HOM05D000095 ORTHO05D000393 1.7e-12 76.3 119 43.7
ATR1128G119 Amborella trichopoda HOM05D000095 ORTHO05D000393 3.0e-12 75.5 109 45.9
Nn4g22967 Nelumbo nucifera HOM05D000095 ORTHO05D000393 3.0e-12 75.5 112 42.9
BcaC08g45846 Brassica carinata HOM05D000095 ORTHO05D000393 3.9e-12 75.1 110 43.6
A07p31260 Brassica napus HOM05D000095 ORTHO05D000393 3.9e-12 75.1 110 43.6
BolC6t38757H Brassica oleracea HOM05D000095 ORTHO05D000393 3.9e-12 75.1 110 43.6
BraA07t30760Z Brassica rapa HOM05D000095 ORTHO05D000393 3.9e-12 75.1 110 43.6
Sc04g0008730 Simmondsia chinensis HOM05D000095 ORTHO05D000393 5.0e-12 74.7 113 45.1
MBI15_g13303_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000393 8.6e-12 73.9 109 42.2
TAR374G1699 Trochodendron aralioides HOM05D000095 ORTHO05D000393 1.1e-11 73.6 110 45.5
TAR622G0298 Trochodendron aralioides HOM05D000095 ORTHO05D000393 1.1e-11 73.6 110 43.6
Nn3g17063 Nelumbo nucifera HOM05D000095 ORTHO05D000393 1.5e-11 73.2 110 42.7
BcaB05g24512 Brassica carinata HOM05D000095 ORTHO05D000393 1.9e-11 72.8 111 44.1
Hund25305 Selenicereus undatus HOM05D000095 ORTHO05D000393 1.9e-11 72.8 116 44.8
C06p36370 Brassica napus HOM05D000095 ORTHO05D000393 3.3e-11 72.0 110 42.7
Ah.03g132120 Amaranthus hybridus HOM05D000095 ORTHO05D000393 5.6e-11 71.2 130 44.6
SEGI_00538 Sequoiadendron giganteum HOM05D000095 ORTHO05D000393 5.6e-11 71.2 112 42.9
SEGI_36144 Sequoiadendron giganteum HOM05D000095 ORTHO05D000393 5.6e-11 71.2 112 42.9
Carub.0002s1670 Capsella rubella HOM05D000095 ORTHO05D000393 9.5e-11 70.5 111 41.4
Thhalv10019007m.g Eutrema salsugineum HOM05D000095 ORTHO05D000393 9.5e-11 70.5 115 47.8
Aqoxy3G00853 Aquilegia oxysepala HOM05D000095 ORTHO05D000393 1.6e-10 69.7 114 44.7
Actinidia24652 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.8e-10 68.9 111 45.9
Aqoxy3G03173 Aquilegia oxysepala HOM05D000095 ORTHO05D000393 8.1e-10 67.4 115 42.6
TWI18G1177 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 8.1e-10 67.4 112 44.6
Migut.L01371 Erythranthe guttata HOM05D000095 ORTHO05D000393 4.0e-09 65.1 46 69.6
MSTRG.650 Avicennia marina HOM05D000095 ORTHO05D000393 5.2e-09 64.7 46 67.4
MSTRG.7848 Avicennia marina HOM05D000095 ORTHO05D000393 6.8e-09 64.3 46 67.4
SalBow2G0059 Salvia bowleyana HOM05D000095 ORTHO05D000393 1.2e-08 63.5 46 69.6
SalBow2G3569 Salvia bowleyana HOM05D000095 ORTHO05D000393 1.2e-08 63.5 46 69.6
ECA234G0419 Erigeron canadensis HOM05D000095 ORTHO05D000393 1.5e-08 63.2 47 68.1
HanXRQChr17g0570451 Helianthus annuus HOM05D000095 ORTHO05D000393 1.5e-08 63.2 46 71.7
Pp3c15_23110 Physcomitrium patens HOM05D000095 ORTHO05D000393 1.5e-08 63.2 117 40.2
CiPaw.06G077600 Carya illinoinensis HOM05D000095 ORTHO05D000393 2.0e-08 62.8 46 76.1
GSVIVG01007843001 Vitis vinifera HOM05D000095 ORTHO05D000393 2.0e-08 62.8 115 41.7
PSO478G4562 Papaver somniferum HOM05D000095 ORTHO05D000393 2.6e-08 62.4 134 38.1
Pp3c9_19080 Physcomitrium patens HOM05D000095 ORTHO05D000393 2.6e-08 62.4 117 39.3
Pp3c9_19090 Physcomitrium patens HOM05D000095 ORTHO05D000393 2.6e-08 62.4 117 39.3
TWI36G1712 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 2.6e-08 62.4 46 73.9
Ah.02g131660 Amaranthus hybridus HOM05D000095 ORTHO05D000393 3.4e-08 62.0 128 46.1
Glyma.08G293300 Glycine max HOM05D000095 ORTHO05D000393 3.4e-08 62.0 46 69.6
Pp3c15_23090 Physcomitrium patens HOM05D000095 ORTHO05D000393 5.8e-08 61.2 117 40.2
Hma1.2p1_0265F.1_g106350 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 7.5e-08 60.8 46 73.9
Lsat_1_v5_gn_4_8401 Lactuca sativa HOM05D000095 ORTHO05D000393 7.5e-08 60.8 46 71.7
Duzib268G1361 Durio zibethinus HOM05D000095 ORTHO05D000393 9.9e-08 60.5 46 73.9
MBI04_g22921_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000393 1.7e-07 59.7 111 39.6
Lj3P1045T56 Lonicera japonica HOM05D000095 ORTHO05D000393 2.2e-07 59.3 46 67.4
SGA_v2.0_scaffold8G04285 Striga asiatica HOM05D000095 ORTHO05D000393 2.2e-07 59.3 46 63.0
DCAR_024503 Daucus carota HOM05D000095 ORTHO05D000393 2.9e-07 58.9 46 65.2
Glyma.18G129900 Glycine max HOM05D000095 ORTHO05D000393 2.9e-07 58.9 45 68.9
Oeu011720.1 Olea europaea HOM05D000095 ORTHO05D000393 2.9e-07 58.9 46 63.0
Oeu044540.1 Olea europaea HOM05D000095 ORTHO05D000393 2.9e-07 58.9 46 67.4
Lsat_1_v5_gn_3_50181 Lactuca sativa HOM05D000095 ORTHO05D000393 3.7e-07 58.5 46 63.0
Cc11_g13920 Coffea canephora HOM05D000095 ORTHO05D000393 4.9e-07 58.2 49 65.3
Haze_15845 Corylus avellana HOM05D000095 ORTHO05D000393 8.3e-07 57.4 114 36.8
Dinv13120 Davidia involucrata HOM05D000095 ORTHO05D000393 8.3e-07 57.4 115 39.1
TWI60G0753 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 8.3e-07 57.4 122 37.7
Hma1.2p1_0002F.1_g002980 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 1.1e-06 57.0 121 38.0
Nitab4.5_0006560g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000393 1.4e-06 56.6 46 71.7
Lj5A119T38 Lonicera japonica HOM05D000095 ORTHO05D000393 1.9e-06 56.2 117 39.3
Actinidia10842 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.4e-06 55.8 110 37.3
COL.COLO4_37118 Corchorus olitorius HOM05D000095 ORTHO05D000393 2.4e-06 55.8 122 36.9
Nitab4.5_0001908g0030 Nicotiana tabacum HOM05D000095 ORTHO05D000393 2.4e-06 55.8 46 65.2
Oeu027012.1 Olea europaea HOM05D000095 ORTHO05D000393 2.4e-06 55.8 126 34.1
PSO161G0128 Papaver somniferum HOM05D000095 ORTHO05D000393 2.4e-06 55.8 132 45.5
Sc10g0007580 Simmondsia chinensis HOM05D000095 ORTHO05D000393 2.4e-06 55.8 120 37.5
GSVIVG01005816001 Vitis vinifera HOM05D000095 ORTHO05D000393 2.4e-06 55.8 118 37.3
ATR0705G019 Amborella trichopoda HOM05D000095 ORTHO05D000393 3.2e-06 55.5 119 37.0
TWI15G0595 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 3.2e-06 55.5 123 35.8
vmacro00012 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 3.2e-06 55.5 124 34.7
vmacro22656 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 3.2e-06 55.5 124 34.7
ATR0705G032 Amborella trichopoda HOM05D000095 ORTHO05D000393 4.1e-06 55.1 122 32.8
Duzib068G0041 Durio zibethinus HOM05D000095 ORTHO05D000393 4.1e-06 55.1 122 36.9
Gohir.A08G168200 Gossypium hirsutum HOM05D000095 ORTHO05D000393 4.1e-06 55.1 121 35.5
Gohir.D08G186800 Gossypium hirsutum HOM05D000095 ORTHO05D000393 4.1e-06 55.1 121 35.5
Gorai.004G196500 Gossypium raimondii HOM05D000095 ORTHO05D000393 4.1e-06 55.1 121 35.5
Thecc.03G247700 Theobroma cacao HOM05D000095 ORTHO05D000393 4.1e-06 55.1 121 35.5
TAR374G0352 Trochodendron aralioides HOM05D000095 ORTHO05D000393 5.4e-06 54.7 108 35.2
CDE08G0559 Ceratophyllum demersum HOM05D000095 ORTHO05D000393 7.1e-06 54.3 126 36.5
MD06G1054100 Malus domestica HOM05D000095 ORTHO05D000393 7.1e-06 54.3 123 35.8
Prupe.5G064900 Prunus persica HOM05D000095 ORTHO05D000393 7.1e-06 54.3 124 36.3
DCAR_004992 Daucus carota HOM05D000095 ORTHO05D000393 9.2e-06 53.9 116 34.5
Prupe.3G059300 Prunus persica HOM05D000095 ORTHO05D000393 9.2e-06 53.9 128 43.0
unitig_8.g2943 Utricularia gibba HOM05D000095 ORTHO05D000393 9.2e-06 53.9 46 58.7


User provided reference genes

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