Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 2029.6 1036 100.0
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1846.6 1045 91.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1828.1 1048 89.8
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1732.2 1050 85.0
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1724.5 1051 84.9
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1724.5 1050 84.4
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1721.8 1052 84.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1715.3 1048 84.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1714.5 1050 84.7
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1707.6 1065 83.8
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1644.8 1054 82.0
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1634.8 1043 80.2
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1631.3 1051 79.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1617.4 1043 79.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1609.3 1057 78.1
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1608.6 1053 78.2
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1604.3 1057 78.0
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1604.3 1043 79.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1603.6 1052 77.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1603.6 1043 79.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1040 79.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1045 78.1
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1599.3 1053 78.2
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1053 77.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1590.5 1040 77.7
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1049 78.4
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1588.5 1053 78.3
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1586.2 1043 77.9
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1585.5 1028 78.4
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1585.1 1053 77.6
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1584.7 1055 77.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1062 78.0
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1048 77.0
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1052 77.6
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1577.4 1027 78.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1060 76.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1049 77.4
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1053 77.4
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1576.2 1054 77.6
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1574.7 1053 77.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1052 76.6
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1570.4 1049 76.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1570.1 1053 76.6
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1570.1 1053 76.7
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1565.1 1050 76.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1563.5 1052 75.9
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1562.0 1048 76.4
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1052 76.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1052 75.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1051 76.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1028 77.8
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1555.4 1054 76.1
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1052 75.9
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1052 75.9
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1554.3 1051 75.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1051 76.2
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1552.7 1044 76.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1552.3 1051 75.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1552.3 1086 73.9
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1047 75.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1551.2 1051 76.1
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1050 76.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1548.9 1050 76.2
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1047 75.8
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1546.9 1026 77.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1543.1 1040 75.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1049 75.8
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1540.0 1052 74.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1539.2 1051 75.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1538.1 1072 75.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1063 75.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1053 75.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1051 74.9
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1052 73.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1048 74.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1042 75.6
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1526.5 1053 75.1
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1082 73.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1049 76.0
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1519.6 1042 75.5
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1513.4 1037 75.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1052 74.3
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1505.0 1092 72.0
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1038 74.8
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1494.2 1052 73.9
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1491.5 1059 73.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1486.9 1051 73.6
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1486.1 1051 73.6
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1483.0 1038 73.8
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1481.1 1042 73.3
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1479.9 1046 73.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1469.5 1094 70.8
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1463.7 1093 70.9
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1452.6 1029 72.5
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1448.0 1152 67.2
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1437.9 1050 71.1
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1429.5 1052 70.6
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1408.3 1022 70.3
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1404.4 1036 69.9
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1401.7 1061 69.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1369.8 1051 69.9
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1349.7 1046 68.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1348.2 1038 67.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1326.6 925 73.7
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1304.7 1052 66.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1283.1 959 69.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1273.5 1036 65.2
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1270.4 1028 65.8
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1267.3 965 66.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1262.7 1008 66.4
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1236.9 1029 63.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1171.0 849 70.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1106.3 1022 57.1
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 7.1e-312 1073.5 1020 57.1
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-310 1069.3 758 73.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 6.8e-305 1050.8 1022 54.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.1e-294 1016.9 1037 54.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.4e-294 1015.8 711 72.4
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.7e-293 1012.3 621 84.2
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 4.3e-291 1005.0 718 71.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-285 986.9 1008 55.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 3.6e-266 922.2 609 75.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 9.9e-264 914.1 1039 51.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-263 912.5 960 55.6
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-259 900.6 1032 51.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 5.3e-257 891.7 1037 51.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 2.6e-256 889.4 479 95.2
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.8e-240 835.1 556 75.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 5.3e-225 785.4 454 88.3
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.3e-218 764.2 446 86.3
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-199 699.1 1037 42.5
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.8e-188 664.1 437 76.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-183 646.0 1013 41.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.6e-181 641.0 399 78.7
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 3.1e-180 636.7 385 83.1
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.5e-174 617.8 523 60.0
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-173 614.4 481 67.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.1e-172 610.1 1068 37.0
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.2e-141 506.1 506 57.9
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-140 504.2 373 68.9
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.5e-139 500.0 367 69.2
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.5e-139 500.0 367 69.2
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-137 495.0 372 71.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.5e-134 484.2 322 73.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.6e-131 472.6 424 59.7
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.1e-129 468.8 562 50.4
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-123 446.0 586 45.6
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 8.7e-119 432.6 1034 32.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.4e-110 402.9 643 40.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.7e-98 365.2 286 66.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.3e-93 349.0 298 62.8
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-88 332.0 501 43.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.4e-86 324.3 195 82.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.1e-76 290.8 526 35.9
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.3e-73 280.8 290 54.8
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.9e-69 268.1 412 42.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 4.6e-67 260.8 374 49.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 5.9e-67 260.4 404 42.8
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 8.6e-66 256.5 185 71.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.3e-61 240.0 292 48.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.6e-59 235.7 135 84.4
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-57 228.8 240 56.2
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-52 210.3 233 54.9
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 9.5e-49 199.9 124 79.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-48 198.7 165 66.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 6.4e-45 187.2 191 49.2
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.6e-41 174.1 148 61.5
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-35 154.8 117 68.4
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-35 154.8 172 55.2
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.2e-30 139.8 253 38.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.0e-26 125.2 216 38.0
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 5.1e-26 124.4 86 67.4
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.3e-24 119.8 99 66.7
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 6.4e-21 107.5 270 32.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.2e-12 78.2 72 50.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.6e-11 76.3 258 28.7
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 1.9e-09 69.3 62 56.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.3e-09 68.2 69 47.8
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 5.7e-09 67.8 78 48.7
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 7.4e-09 67.4 49 63.3


User provided reference genes

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