Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.3e-115 419.9 228 100.0
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 6.4e-107 391.0 228 94.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 5.1e-104 381.3 229 90.4
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.1e-102 375.9 230 90.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.6e-102 375.2 230 89.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.6e-102 375.2 228 89.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 6.4e-99 364.4 229 88.2
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.6e-97 358.2 229 87.3
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-96 355.5 231 83.5
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-96 355.5 231 83.5
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 8.7e-96 354.0 230 84.3
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 8.7e-96 354.0 230 86.5
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.9e-95 352.8 230 83.9
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.9e-95 352.8 230 87.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.3e-95 352.1 230 84.3
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.3e-95 352.1 229 84.3
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.6e-94 349.7 228 84.2
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.1e-94 349.4 229 83.4
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.1e-93 347.1 231 83.5
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.4e-93 346.7 235 81.7
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.8e-93 346.3 233 82.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.6e-92 342.4 228 82.9
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 4.5e-92 341.7 232 81.5
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 5.8e-92 341.3 230 82.6
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 7.6e-92 340.9 231 84.0
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.0e-91 340.5 230 81.3
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.0e-91 340.5 231 81.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.3e-91 340.1 231 81.4
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.7e-91 339.7 246 76.4
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.4e-90 336.7 230 81.7
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.2e-90 335.1 231 80.1
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 7.1e-90 334.3 230 80.9
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 7.1e-90 334.3 231 80.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 7.1e-90 334.3 229 81.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.2e-89 333.6 230 81.7
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.2e-89 333.6 230 80.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.5e-89 332.0 230 80.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.0e-89 331.3 233 81.1
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 7.9e-89 330.9 230 80.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.8e-88 329.7 231 77.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.8e-88 329.7 231 77.1
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 5.1e-88 328.2 228 78.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 6.7e-88 327.8 231 76.2
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 6.7e-88 327.8 229 80.3
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.1e-87 327.0 230 78.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.5e-87 326.6 231 76.6
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.5e-87 325.9 232 77.2
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.5e-87 325.9 231 77.5
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 5.7e-87 324.7 232 76.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 5.7e-87 324.7 232 76.7
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 7.4e-87 324.3 229 79.9
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 7.4e-87 324.3 231 78.4
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 9.6e-87 323.9 233 79.8
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-86 323.6 232 76.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.6e-86 323.2 231 78.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.1e-86 322.8 232 76.7
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.8e-86 322.4 243 75.7
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 3.7e-86 322.0 232 76.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.8e-86 321.6 228 75.0
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 6.2e-86 321.2 230 80.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 6.2e-86 321.2 229 79.9
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.1e-85 320.5 232 75.9
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-85 320.1 233 76.0
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.4e-85 320.1 233 76.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.4e-85 320.1 232 77.6
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.8e-85 319.7 231 74.9
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.4e-85 319.3 232 75.9
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.4e-85 319.3 232 75.9
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 3.1e-85 318.9 232 77.2
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.3e-85 318.2 232 78.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.9e-85 317.8 231 78.8
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 6.9e-85 317.8 230 77.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.2e-84 317.0 233 78.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-84 317.0 232 75.9
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.2e-84 317.0 234 78.6
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 75.4
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 75.4
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.5e-84 316.6 231 79.2
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.5e-84 316.6 233 78.5
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.5e-84 316.6 233 78.5
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.5e-84 315.1 230 74.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-83 313.5 234 77.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.3e-83 313.5 235 75.7
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.7e-83 313.2 231 77.5
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-83 313.2 231 75.8
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.9e-83 312.4 228 78.1
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.8e-83 312.0 231 79.2
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 4.9e-83 311.6 228 73.2
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.4e-82 310.1 232 77.2
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.4e-82 310.1 230 75.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-82 309.7 234 76.9
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 3.2e-82 308.9 229 76.4
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 3.2e-82 308.9 232 76.3
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 4.2e-82 308.5 228 74.6
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.2e-81 307.0 284 62.3
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 2.1e-81 306.2 228 75.0
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 7.9e-81 304.3 230 72.6
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 73.8
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.3e-80 303.5 229 74.7
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.3e-80 303.5 228 71.1
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 3.9e-80 302.0 229 75.1
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 8.7e-80 300.8 230 75.2
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.7e-80 300.8 233 74.7
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.1e-79 300.4 251 65.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 5.7e-79 298.1 233 75.1
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.6e-78 296.6 237 73.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.8e-78 295.8 234 73.5
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 4.8e-78 295.0 230 74.8
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.8e-78 295.0 234 73.5
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 4.8e-78 295.0 234 73.5
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 4.8e-78 295.0 231 73.6
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-76 290.4 231 69.3
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.0e-76 289.7 231 68.4
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.6e-76 289.3 230 72.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.6e-76 289.3 228 71.9
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 5.9e-76 288.1 232 71.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 5.9e-76 288.1 225 73.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 5.9e-76 288.1 232 72.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 5.0e-75 285.0 231 71.4
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 3.2e-74 282.3 232 70.3
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 9.4e-74 280.8 228 66.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.1e-73 279.6 228 66.7
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.8e-72 276.6 231 69.7
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.1e-72 275.0 216 75.9
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-71 273.1 228 68.9
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.5e-71 272.7 228 68.0
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 5.7e-71 271.6 232 69.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.7e-71 270.8 228 68.9
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-70 270.4 228 68.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-69 267.3 228 67.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 3.4e-68 262.3 271 59.8
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 5.9e-68 261.5 230 67.4
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.3e-67 260.4 232 68.1
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.7e-67 260.0 228 67.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.1e-65 253.1 233 67.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.3e-64 249.6 229 65.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 5.1e-64 248.4 229 64.6
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 6.5e-59 231.5 122 95.9
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.5e-58 230.3 185 73.5
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 4.2e-58 228.8 187 70.6
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.4e-53 213.0 237 58.6
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.1e-53 212.6 155 80.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.3e-53 211.8 231 60.6
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.1e-53 211.1 187 69.0
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.0e-51 205.3 254 51.2
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.8e-48 194.9 121 80.2
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 8.8e-48 194.5 154 74.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 4.4e-47 192.2 233 53.6
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.0e-45 184.9 121 76.0
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.5e-42 176.4 240 49.2
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-42 176.4 113 78.8
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.7e-41 172.2 113 77.0
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.8e-40 167.9 155 68.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-39 166.8 173 61.8
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 7.5e-39 164.9 93 89.2
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-38 164.1 97 87.6
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.1e-37 159.1 123 69.9
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.3e-35 154.1 173 59.5
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 8.6e-35 151.4 109 78.9
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 3.3e-34 149.4 76 97.4
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.3e-30 135.2 81 82.7
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 8.6e-27 124.8 177 50.3
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-26 124.0 90 72.2
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-24 115.9 111 69.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 4.0e-24 115.9 78 76.9
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.0e-23 113.6 228 39.0
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.6e-23 113.2 153 49.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-21 107.1 183 41.5
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.5e-20 102.8 225 37.3
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.8e-16 88.6 44 95.5
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.2e-15 87.8 75 64.0
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 3.4e-15 86.3 56 76.8
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.4e-15 85.9 69 63.8
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 6.0e-12 75.5 120 40.8
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.6e-11 72.0 89 50.6
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-08 64.7 92 48.9


User provided reference genes

Program Settings