Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 0.0e+00 1385.5 684 100.0
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 0.0e+00 1195.3 687 86.3
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 0.0e+00 1160.6 686 84.7
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 0.0e+00 1152.9 689 83.5
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 8.4e-304 1046.6 691 76.4
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 1.9e-300 1035.4 691 75.8
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 3.4e-297 1024.6 693 75.8
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.3e-288 996.1 695 71.8
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 6.3e-283 977.2 692 71.5
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 2.6e-281 971.8 701 70.3
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 5.9e-281 970.7 704 70.6
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 7.7e-281 970.3 695 70.6
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 5.5e-279 964.1 695 69.9
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 2.7e-278 961.8 686 70.1
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 6.1e-278 960.7 699 69.5
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.4e-277 959.5 690 69.1
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 8.8e-277 956.8 703 69.1
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 2.0e-276 955.7 700 69.7
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 2.0e-276 955.7 705 68.8
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 7.4e-276 953.7 697 69.0
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 1.7e-275 952.6 693 69.6
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 1.7e-275 952.6 686 69.8
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 6.3e-275 950.7 702 68.4
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.1e-274 949.9 698 68.8
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 1.8e-274 949.1 700 69.1
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 5.3e-274 947.6 625 73.0
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 9.1e-274 946.8 690 68.4
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.2e-273 946.4 653 70.8
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 2.0e-273 945.7 698 69.6
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 2.6e-273 945.3 686 69.1
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.9e-272 941.8 697 67.9
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 5.0e-272 941.0 686 69.0
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.9e-271 939.1 635 72.0
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 6.1e-270 934.1 692 68.6
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 8.0e-270 933.7 686 68.2
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 1.0e-269 933.3 696 68.1
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 4.0e-269 931.4 688 69.2
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 8.8e-269 930.2 690 68.3
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.6e-268 928.7 684 68.0
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.7e-268 926.8 687 67.2
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.2e-267 925.6 695 67.2
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 1.4e-266 922.9 645 69.0
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.4e-266 922.2 690 67.7
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 2.4e-266 922.2 708 66.8
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 3.1e-266 921.8 706 67.4
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 4.1e-266 921.4 695 67.3
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 1.2e-265 919.8 696 67.8
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 1.7e-264 916.0 704 66.6
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.5e-264 914.1 690 67.8
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 3.2e-263 911.8 645 69.9
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 3.0e-261 905.2 690 67.1
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 8.8e-261 903.7 688 67.7
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 8.8e-261 903.7 693 66.8
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 1.2e-260 903.3 693 66.8
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 5.7e-260 901.0 696 65.8
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 2.8e-259 898.7 697 66.4
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 4.8e-259 897.9 695 67.2
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 4.8e-259 897.9 689 67.1
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 1.4e-258 896.3 693 66.7
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 5.9e-257 891.0 628 68.2
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 1.3e-256 889.8 686 65.5
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 2.9e-256 888.6 628 68.0
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.1e-255 886.7 700 66.3
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 1.9e-255 885.9 692 64.9
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 2.5e-255 885.6 684 64.6
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 4.2e-255 884.8 690 65.5
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 7.2e-255 884.0 689 64.7
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 2.1e-254 882.5 690 64.8
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 2.8e-254 882.1 689 64.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 2.8e-254 882.1 699 64.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 6.1e-254 880.9 690 64.6
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 6.1e-254 880.9 692 65.6
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 1.4e-253 879.8 689 64.4
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 5.2e-253 877.9 690 64.5
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 2.2e-251 872.5 683 64.3
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 1.8e-250 869.4 714 63.7
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 4.1e-250 868.2 617 68.2
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.0e-248 863.6 609 68.3
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 5.8e-244 847.8 583 70.0
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 7.0e-242 840.9 683 62.5
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 3.5e-241 838.6 651 64.8
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 6.2e-238 827.8 699 61.7
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.9e-234 816.2 570 71.9
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 4.3e-231 805.1 573 71.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 2.8e-230 802.4 683 61.5
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.2e-228 797.0 576 69.1
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 3.7e-227 792.0 567 68.6
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.9e-226 789.6 661 61.3
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 5.4e-226 788.1 815 53.7
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 9.2e-226 787.3 578 65.7
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 2.1e-225 786.2 813 54.2
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 3.6e-214 748.8 599 64.9
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 1.6e-209 733.4 670 59.1
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.6e-198 696.8 612 58.0
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 1.9e-194 683.3 486 72.0
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 4.8e-190 668.7 804 48.5
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 1.5e-162 577.4 555 56.2
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 3.7e-142 509.6 458 56.6
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.6e-140 504.2 373 66.2
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 2.8e-137 493.4 288 85.8
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 5.9e-132 475.7 539 48.8
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 4.9e-118 429.5 596 43.6
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 5.8e-103 379.4 349 59.3
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 4.3e-98 363.2 272 65.4
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.8e-94 350.1 335 56.4
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.8e-94 350.1 335 56.4
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 7.1e-85 319.3 568 36.4
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.8e-83 314.7 272 57.4
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.4e-77 295.0 235 65.1
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 5.7e-58 229.9 584 30.8
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 4.2e-53 213.8 267 44.6
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 4.7e-52 210.3 241 51.9
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.2e-41 174.9 193 48.7
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.5e-34 152.1 124 59.7
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 2.0e-34 151.8 146 55.5
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.3e-33 149.1 145 57.9
TPR.G22596 Trifolium pratense HOM05D006589 ORTHO05D008350 5.4e-24 117.1 70 97.1
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 7.5e-10 70.1 124 37.9
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 6.4e-09 67.0 132 33.3


User provided reference genes

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