Gene: AT3G48500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G48500
- Transcript Identifier AT3G48500.1
- Gene Type Coding gene
- Location Chr3 : 17962209-17965408 : positive
Gene Family Information
- ID HOM05D006589
- #Genes/#Species 122/94
- Phylogenetic origin
- ID ORTHO05D008350
- #Genes/#Species 120/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G48500.1
- symbol PDE312
- Alias PTAC10,PLASTID TRANSCRIPTIONALLY ACTIVE 10,TAC10
- full_name PIGMENT DEFECTIVE 312
- uniprot F4JF21
Descriptions
- Description Nucleic acid-binding, OB-fold-like protein
- Computational description PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); Has 110 Blast hits to 108 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 5; Fungi - 14; Plants - 46; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA IEA | GOA Database | chloroplast | |
| GO:0009507 | HDA IBA | Gene Ontology | chloroplast | 2 3 |
| GO:0000427 | IEA | Gene Ontology | plastid-encoded plastid RNA polymerase complex | |
| GO:0000427 | IEA | InterPro | plastid-encoded plastid RNA polymerase complex | |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0009508 | IDA | GOA Database | plastid chromosome | |
| GO:0009508 | IBA | Gene Ontology | plastid chromosome | 3 |
| GO:0009570 | IDA | GOA Database | chloroplast stroma | |
| GO:0009570 | HDA | Gene Ontology | chloroplast stroma | 4 |
| GO:0042644 | IDA | GOA Database | chloroplast nucleoid | |
| GO:0042644 | HDA | Gene Ontology | chloroplast nucleoid | 5 |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.6.1.2.2.3 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP3/TAC10 |