Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 2.7e-32 141.4 70 100.0
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.7e-29 131.0 70 91.4
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 4.8e-29 130.6 70 87.1
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 8.2e-29 129.8 70 87.1
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.4e-28 128.3 70 85.7
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 3.1e-28 127.9 70 87.1
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.1e-28 127.9 70 87.1
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.1e-28 127.9 71 91.5
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 4.1e-28 127.5 71 90.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 4.1e-28 127.5 70 85.7
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 9.1e-28 126.3 71 88.7
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 9.1e-28 126.3 71 88.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 9.1e-28 126.3 71 88.7
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 9.1e-28 126.3 70 85.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.2e-27 125.9 70 82.9
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.5e-27 125.6 71 88.7
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 2.0e-27 125.2 70 84.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.0e-27 125.2 71 87.3
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.0e-27 125.2 70 84.3
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.0e-27 125.2 70 84.3
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.6e-27 124.8 71 88.7
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 4.5e-27 124.0 72 86.1
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 4.5e-27 124.0 70 82.9
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 5.9e-27 123.6 72 86.1
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 5.9e-27 123.6 70 84.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 7.7e-27 123.2 70 80.0
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 7.7e-27 123.2 71 85.9
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.0e-26 122.9 70 81.4
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.3e-26 122.5 70 82.9
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.3e-26 122.5 71 85.9
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 1.7e-26 122.1 73 80.8
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.7e-26 122.1 70 81.4
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.2e-26 121.7 71 87.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.9e-26 121.3 71 87.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.8e-26 120.9 71 84.5
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 5.0e-26 120.6 71 81.7
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 5.0e-26 120.6 70 81.4
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 5.0e-26 120.6 70 81.4
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 5.0e-26 120.6 70 81.4
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 5.0e-26 120.6 70 81.4
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 6.5e-26 120.2 71 83.1
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 6.5e-26 120.2 70 78.6
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.5e-26 120.2 70 80.0
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 8.5e-26 119.8 71 83.1
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 8.5e-26 119.8 71 80.3
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.1e-25 119.4 70 81.4
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.4e-25 119.0 70 81.4
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.4e-25 119.0 70 81.4
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.4e-25 119.0 70 81.4
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.9e-25 118.6 71 83.1
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 2.5e-25 118.2 72 79.2
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.5e-25 118.2 71 81.7
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.5e-25 118.2 70 80.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.2e-25 117.9 73 78.1
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.2e-25 117.5 71 81.7
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 5.5e-25 117.1 70 77.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.2e-25 116.7 70 78.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 9.4e-25 116.3 70 80.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 9.4e-25 116.3 71 78.9
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.2e-24 115.9 71 78.9
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.2e-24 115.9 70 78.6
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.1e-24 115.2 71 78.9
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.1e-24 115.2 71 78.9
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.1e-24 115.2 71 78.9
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.6e-24 114.4 71 80.3
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 4.7e-24 114.0 70 77.1
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 4.7e-24 114.0 71 76.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 4.7e-24 114.0 84 75.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.7e-24 114.0 84 75.0
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.7e-24 114.0 72 75.0
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.1e-24 113.6 84 73.8
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 6.1e-24 113.6 70 72.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 7.9e-24 113.2 71 78.9
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 7.9e-24 113.2 72 73.6
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 7.9e-24 113.2 74 73.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 7.9e-24 113.2 72 76.4
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.0e-23 112.8 71 77.5
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.4e-23 112.5 84 72.6
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.4e-23 112.5 71 76.1
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.4e-23 112.5 71 76.1
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.4e-23 112.5 71 77.5
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.8e-23 112.1 71 76.1
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.8e-23 112.1 74 75.7
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 2.3e-23 111.7 84 72.6
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 2.3e-23 111.7 71 76.1
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 3.0e-23 111.3 70 71.4
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 3.9e-23 110.9 66 84.8
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 5.1e-23 110.5 72 72.2
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 5.1e-23 110.5 71 74.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.1e-22 109.4 71 76.1
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.1e-22 109.4 71 73.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 1.1e-22 109.4 71 74.6
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.5e-22 109.0 71 74.6
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.5e-22 109.0 71 74.6
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.0e-22 108.6 71 73.2
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 3.3e-22 107.8 71 73.2
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 4.4e-22 107.5 70 71.4
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 4.4e-22 107.5 70 70.0
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 4.4e-22 107.5 74 71.6
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 5.7e-22 107.1 71 71.8
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 7.4e-22 106.7 75 69.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 9.7e-22 106.3 71 71.8
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 9.7e-22 106.3 71 70.4
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 2.8e-21 104.8 72 70.8
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.8e-21 104.8 71 71.8
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.8e-21 104.8 73 69.9
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.8e-21 104.8 73 69.9
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 6.3e-21 103.6 71 70.4
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.3e-21 103.6 71 70.4
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.1e-20 102.8 71 73.2
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-20 102.4 71 70.4
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.1e-20 101.3 71 70.4
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.1e-20 100.9 72 66.7
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.9e-20 100.1 72 68.1
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.6e-19 98.2 72 63.9
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 9.4e-17 89.7 101 50.5
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 1.2e-16 89.4 81 59.3
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 2.7e-16 88.2 50 84.0
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.6e-16 87.8 56 76.8
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.8e-15 85.5 55 76.4
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.1e-14 82.8 51 80.4
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 2.6e-14 81.6 50 80.0
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 7.4e-14 80.1 77 55.8
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.7e-13 79.0 70 55.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.8e-13 78.2 56 76.8
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-12 75.9 70 54.3
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 4.1e-12 74.3 83 45.8
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 5.3e-12 73.9 38 84.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 2.6e-11 71.6 47 74.5
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 3.2e-09 64.7 45 77.8
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 3.2e-09 64.7 45 77.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 2.7e-08 61.6 45 64.4
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 4.0e-07 57.8 48 66.7
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 4.0e-07 57.8 48 66.7
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 5.2e-07 57.4 52 51.9
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 6.7e-07 57.0 48 66.7
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.8e-07 56.6 70 44.3
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.5e-06 55.8 66 50.0
A05p14630 Brassica napus HOM05D015232 ORTHO05D015515 4.4e-06 54.3 47 63.8
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 9.7e-06 53.1 32 78.1


User provided reference genes

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