Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 2.4e-75 285.4 147 100.0
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 5.7e-40 167.9 87 93.1
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 2.2e-36 156.0 87 86.2
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 2.2e-36 156.0 87 86.2
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.1e-35 153.7 82 89.0
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 2.5e-35 152.5 83 85.5
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 4.2e-35 151.8 86 86.0
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 4.2e-35 151.8 86 86.0
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 4.2e-35 151.8 83 85.5
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 7.2e-35 151.0 82 87.8
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 1.2e-34 150.2 91 80.2
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 1.6e-34 149.8 91 79.1
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 1.4e-33 146.7 82 85.4
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 1.8e-33 146.4 85 82.4
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 3.0e-33 145.6 86 80.2
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 4.0e-33 145.2 82 85.4
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 8.8e-33 144.1 82 81.7
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 8.8e-33 144.1 81 84.0
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 1.5e-32 143.3 82 82.9
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.0e-32 142.9 82 81.7
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 3.3e-32 142.1 90 76.7
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 3.3e-32 142.1 84 77.4
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 7.5e-32 141.0 84 77.4
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 9.7e-32 140.6 83 80.7
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 1.7e-31 139.8 83 79.5
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 2.2e-31 139.4 86 77.9
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 2.8e-31 139.0 83 80.7
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 2.8e-31 139.0 82 81.7
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 4.8e-31 138.3 85 77.6
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 4.8e-31 138.3 83 79.5
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 4.8e-31 138.3 82 80.5
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 6.3e-31 137.9 81 80.2
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 6.3e-31 137.9 81 77.8
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 8.2e-31 137.5 84 82.1
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 8.2e-31 137.5 81 79.0
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 1.8e-30 136.3 83 79.5
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 1.8e-30 136.3 83 79.5
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 1.8e-30 136.3 86 77.9
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 1.8e-30 136.3 85 78.8
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 1.8e-30 136.3 82 79.3
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 3.1e-30 135.6 75 84.0
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 3.1e-30 135.6 82 78.0
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 4.1e-30 135.2 86 75.6
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 4.1e-30 135.2 84 79.8
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 5.3e-30 134.8 86 76.7
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 5.3e-30 134.8 85 76.5
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 7.0e-30 134.4 85 77.6
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 7.0e-30 134.4 86 73.3
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.0e-30 134.4 86 73.3
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 7.0e-30 134.4 75 82.7
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 9.1e-30 134.0 81 77.8
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 9.1e-30 134.0 80 77.5
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 9.1e-30 134.0 82 78.0
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.2e-29 133.7 75 82.7
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 1.6e-29 133.3 79 81.0
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 1.6e-29 133.3 83 75.9
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.6e-29 133.3 75 85.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 2.0e-29 132.9 82 75.6
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 2.0e-29 132.9 80 77.5
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 3.5e-29 132.1 78 80.8
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 4.5e-29 131.7 80 75.0
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 1.3e-28 130.2 78 80.8
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.7e-28 129.8 117 58.1
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 2.2e-28 129.4 75 77.3
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 5.0e-28 128.3 81 75.3
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 1.1e-27 127.1 85 70.6
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 1.5e-27 126.7 85 70.6
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 1.5e-27 126.7 76 78.9
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.9e-27 126.3 76 81.6
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 2.5e-27 125.9 80 77.5
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 3.2e-27 125.6 75 81.3
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 2.1e-26 122.9 78 75.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 2.7e-26 122.5 78 75.6
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 2.7e-26 122.5 78 75.6
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 4.7e-26 121.7 78 75.6
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 6.1e-26 121.3 78 75.6
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 1.0e-25 120.6 78 74.4
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.0e-25 120.6 76 76.3
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.8e-25 119.8 82 70.7
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 2.3e-25 119.4 72 80.6
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 2.3e-25 119.4 72 80.6
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 2.3e-25 119.4 72 80.6
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 8.8e-25 117.5 70 81.4
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 3.4e-24 115.5 74 75.7
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 6.3e-23 111.3 70 82.9
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.2e-21 107.1 61 82.0
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 2.7e-21 105.9 77 71.4
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 3.5e-21 105.5 59 84.7
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.0e-20 104.0 70 72.9
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.0e-20 101.7 62 80.6
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.0e-20 101.7 62 80.6
Aa31sc608G30 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.9e-19 99.8 67 76.1
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 2.8e-18 95.9 77 62.3
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 6.8e-17 91.3 111 51.4
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 1.5e-16 90.1 74 68.9
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-15 84.3 86 57.0
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 3.1e-14 82.4 70 61.4
SEGI_09852 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 2.8e-10 69.3 57 68.4
SEGI_39788 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.8e-09 66.6 48 70.8
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 2.3e-09 66.2 35 94.3
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 1.3e-07 60.5 80 47.5


User provided reference genes

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