Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24658 Trifolium pratense HOM05D001120 ORTHO05D002447 3.9e-38 161.0 83 100.0
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 1.5e-29 132.5 80 82.5
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 1.2e-26 122.9 80 82.5
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 5.0e-25 117.5 80 73.8
Phvul.004G125300 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 9.7e-21 103.2 80 67.5
VMungo0464G2024 Vigna mungo HOM05D001120 ORTHO05D002447 6.3e-20 100.5 80 68.8
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 3.1e-19 98.2 79 69.6
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 3.1e-19 98.2 83 65.1
Lalb_Chr03g0033001 Lupinus albus HOM05D001120 ORTHO05D002447 5.3e-19 97.4 80 66.2
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 1.6e-18 95.9 78 70.5
VMungo0720G0371 Vigna mungo HOM05D001120 ORTHO05D002447 2.7e-18 95.1 81 66.7
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 7.7e-18 93.6 77 66.2
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 7.7e-18 93.6 77 66.2
Glyma.10G242000 Glycine max HOM05D001120 ORTHO05D002447 7.7e-18 93.6 81 65.4
Lalb_Chr19g0131251 Lupinus albus HOM05D001120 ORTHO05D002447 1.3e-17 92.8 81 67.9
Phvul.007G063600 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 5.0e-17 90.9 81 64.2
Glyma.20G152100 Glycine max HOM05D001120 ORTHO05D002447 6.5e-17 90.5 77 64.9
Phvul.004G125400 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 1.9e-16 89.0 80 63.8
Lalb_Chr03g0033011 Lupinus albus HOM05D001120 ORTHO05D002447 3.2e-16 88.2 80 62.5
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 7.2e-16 87.0 82 59.8
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 9.4e-16 86.7 80 56.2
Glyma.09G151900 Glycine max HOM05D001120 ORTHO05D002447 2.1e-15 85.5 80 58.8
Medtr1g102420 Medicago truncatula HOM05D001120 ORTHO05D002447 4.7e-15 84.3 80 56.2
Glyma.16G202500 Glycine max HOM05D001120 ORTHO05D002447 1.4e-14 82.8 80 57.5
C09p08490 Brassica napus HOM05D001120 ORTHO05D002447 5.2e-14 80.9 78 57.7
BolC9t53757H Brassica oleracea HOM05D001120 ORTHO05D002447 5.2e-14 80.9 78 57.7
BcaC04g23423 Brassica carinata HOM05D001120 ORTHO05D002447 6.8e-14 80.5 78 56.4
BcaNung01406 Brassica carinata HOM05D001120 ORTHO05D002447 4.4e-13 77.8 75 58.7
Glyma.16G202000 Glycine max HOM05D001120 ORTHO05D002447 5.7e-13 77.4 51 70.6
Manes.14G031901 Manihot esculenta HOM05D001120 ORTHO05D002447 7.5e-13 77.0 72 58.3
Psat6g203680 Pisum sativum HOM05D001120 ORTHO05D002447 1.3e-12 76.3 51 66.7
C03p64690 Brassica napus HOM05D001120 ORTHO05D002447 2.8e-12 75.1 73 58.9
BolC3t18728H Brassica oleracea HOM05D001120 ORTHO05D002447 2.8e-12 75.1 73 58.9
A02p42180 Brassica napus HOM05D001120 ORTHO05D002447 4.8e-12 74.3 76 55.3
C02p62030 Brassica napus HOM05D001120 ORTHO05D002447 4.8e-12 74.3 76 55.3
BraA02t09147Z Brassica rapa HOM05D001120 ORTHO05D002447 4.8e-12 74.3 76 55.3
A09p07570 Brassica napus HOM05D001120 ORTHO05D002447 1.1e-11 73.2 78 56.4
Ciclev10005897m.g Citrus clementina HOM05D001120 ORTHO05D002447 1.1e-11 73.2 59 62.7
Ciclev10006003m.g Citrus clementina HOM05D001120 ORTHO05D002447 1.4e-11 72.8 76 57.9
Sp6g35700 Schrenkiella parvula HOM05D001120 ORTHO05D002447 1.4e-11 72.8 76 52.6
BcaC03g18135 Brassica carinata HOM05D001120 ORTHO05D002447 2.4e-11 72.0 76 53.9
CARHR275990 Cardamine hirsuta HOM05D001120 ORTHO05D002447 2.4e-11 72.0 73 54.8
Cpa.g.sc3.254 Carica papaya HOM05D001120 ORTHO05D002447 2.4e-11 72.0 72 59.7
BolC2t12263H Brassica oleracea HOM05D001120 ORTHO05D002447 3.1e-11 71.6 76 53.9
Thhalv10004970m.g Eutrema salsugineum HOM05D001120 ORTHO05D002447 4.1e-11 71.2 74 58.1
COL.COLO4_14202 Corchorus olitorius HOM05D001120 ORTHO05D002447 5.4e-11 70.9 79 50.6
THA.LOC104824840 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 5.4e-11 70.9 73 56.2
Eucgr.A02867 Eucalyptus grandis HOM05D001120 ORTHO05D002447 7.0e-11 70.5 73 53.4
Potri.015G132900 Populus trichocarpa HOM05D001120 ORTHO05D002447 7.0e-11 70.5 74 47.3
PGR042G1649 Punica granatum HOM05D001120 ORTHO05D002447 7.0e-11 70.5 80 53.8
BcaB07g29790 Brassica carinata HOM05D001120 ORTHO05D002447 9.1e-11 70.1 66 57.6
Sp2g25400 Schrenkiella parvula HOM05D001120 ORTHO05D002447 9.1e-11 70.1 81 54.3
Carub.0008s2289 Capsella rubella HOM05D001120 ORTHO05D002447 1.6e-10 69.3 73 50.7
TWI23G0455 Tripterygium wilfordii HOM05D001120 ORTHO05D002447 1.6e-10 69.3 80 51.2
CANSAT21G2107 Cannabis sativa HOM05D001120 ORTHO05D002447 2.0e-10 68.9 80 51.2
AL8G39020 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 3.5e-10 68.2 81 51.9
Sabra15G0145300 Salix brachista HOM05D001120 ORTHO05D002447 3.5e-10 68.2 72 48.6
Lalb_Chr06g0160841 Lupinus albus HOM05D001120 ORTHO05D002447 1.0e-09 66.6 80 50.0
Atru.chr1.610 Acer truncatum HOM05D001120 ORTHO05D002447 1.3e-09 66.2 75 53.3
Thecc.03G163700 Theobroma cacao HOM05D001120 ORTHO05D002447 1.3e-09 66.2 80 50.0
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 1.7e-09 65.9 76 48.7
Potri.015G132700 Populus trichocarpa HOM05D001120 ORTHO05D002447 1.7e-09 65.9 76 46.1
Prupe.3G084200 Prunus persica HOM05D001120 ORTHO05D002447 1.7e-09 65.9 80 50.0
Sed0010780 Sechium edule HOM05D001120 ORTHO05D002447 1.7e-09 65.9 63 55.6
Duzib068G1270 Durio zibethinus HOM05D001120 ORTHO05D002447 2.2e-09 65.5 76 53.9
PGR031G1653 Punica granatum HOM05D001120 ORTHO05D002447 2.9e-09 65.1 80 46.2
Gohir.D12G263833 Gossypium hirsutum HOM05D001120 ORTHO05D002447 5.0e-09 64.3 60 58.3
Gorai.008G282900 Gossypium raimondii HOM05D001120 ORTHO05D002447 5.0e-09 64.3 60 58.3
Aa31LG3G19170 Aethionema arabicum HOM05D001120 ORTHO05D002447 8.5e-09 63.5 75 48.0
A03p03110 Brassica napus HOM05D001120 ORTHO05D002447 8.5e-09 63.5 76 47.4
BraA03t09668Z Brassica rapa HOM05D001120 ORTHO05D002447 8.5e-09 63.5 76 47.4
CANSAT56G0855 Cannabis sativa HOM05D001120 ORTHO05D002447 8.5e-09 63.5 74 44.6
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 8.5e-09 63.5 77 48.1
Potri.012G130900 Populus trichocarpa HOM05D001120 ORTHO05D002447 8.5e-09 63.5 74 47.3
GSVIVG01018478001 Vitis vinifera HOM05D001120 ORTHO05D002447 8.5e-09 63.5 79 50.6
Actinidia21986 Actinidia chinensis HOM05D001120 ORTHO05D002447 1.1e-08 63.2 66 47.0
AT5G62200 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 1.1e-08 63.2 79 45.6
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 1.1e-08 63.2 80 46.2
BcaB01g06032 Brassica carinata HOM05D001120 ORTHO05D002447 1.5e-08 62.8 59 52.5
Sabra12G0098500 Salix brachista HOM05D001120 ORTHO05D002447 1.5e-08 62.8 83 45.8
C03p03510 Brassica napus HOM05D001120 ORTHO05D002447 1.9e-08 62.4 59 52.5
BolC3t12894H Brassica oleracea HOM05D001120 ORTHO05D002447 1.9e-08 62.4 59 52.5
DCAR_025505 Daucus carota HOM05D001120 ORTHO05D002447 1.9e-08 62.4 83 48.2
Lsat_1_v5_gn_4_89020 Lactuca sativa HOM05D001120 ORTHO05D002447 1.9e-08 62.4 80 42.5
CiPaw.03G098300 Carya illinoinensis HOM05D001120 ORTHO05D002447 2.5e-08 62.0 80 48.8
Sp4g23740 Schrenkiella parvula HOM05D001120 ORTHO05D002447 2.5e-08 62.0 80 43.8
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 3.2e-08 61.6 62 51.6
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 3.2e-08 61.6 81 46.9
Duzib084G0294 Durio zibethinus HOM05D001120 ORTHO05D002447 3.2e-08 61.6 60 55.0
FAN05G2553 Fragaria x ananassa HOM05D001120 ORTHO05D002447 3.2e-08 61.6 80 50.0
QL12p039215 Quercus lobata HOM05D001120 ORTHO05D002447 3.2e-08 61.6 79 48.1
Sed0000479 Sechium edule HOM05D001120 ORTHO05D002447 3.2e-08 61.6 78 43.6
C04p69070 Brassica napus HOM05D001120 ORTHO05D002447 4.2e-08 61.2 80 43.8
BolC4t28404H Brassica oleracea HOM05D001120 ORTHO05D002447 4.2e-08 61.2 80 43.8
CSS0043989 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D002477 4.2e-08 61.2 82 41.5
FAN02G1869 Fragaria x ananassa HOM05D001120 ORTHO05D002447 4.2e-08 61.2 80 50.0
Hma1.2p1_0515F.1_g170130 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 4.2e-08 61.2 80 46.2
COL.COLO4_12943 Corchorus olitorius HOM05D001120 ORTHO05D002447 5.5e-08 60.8 80 42.5
Eucgr.J03061 Eucalyptus grandis HOM05D001120 ORTHO05D002447 5.5e-08 60.8 82 43.9
TWI18G0686 Tripterygium wilfordii HOM05D001120 ORTHO05D002447 5.5e-08 60.8 80 46.2
A05p02300 Brassica napus HOM05D001120 ORTHO05D002447 7.2e-08 60.5 82 45.1
BraA05t19225Z Brassica rapa HOM05D001120 ORTHO05D002447 7.2e-08 60.5 82 45.1
FvH4_6g29960 Fragaria vesca HOM05D001120 ORTHO05D002447 7.2e-08 60.5 80 48.8
PGSC0003DMG400000634 Solanum tuberosum HOM05D001120 ORTHO05D002447 7.2e-08 60.5 79 45.6
Eucgr.F02528 Eucalyptus grandis HOM05D001120 ORTHO05D002447 9.4e-08 60.1 80 42.5
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 9.4e-08 60.1 80 42.5
Lj5C70T11 Lonicera japonica HOM05D001120 ORTHO05D002447 9.4e-08 60.1 80 42.5
QL01p011565 Quercus lobata HOM05D001120 ORTHO05D002447 9.4e-08 60.1 80 46.2
C04p02740 Brassica napus HOM05D001120 ORTHO05D002447 1.2e-07 59.7 82 47.6
BolC4t21914H Brassica oleracea HOM05D001120 ORTHO05D002447 1.2e-07 59.7 82 47.6
Cc06_g08490 Coffea canephora HOM05D001120 ORTHO05D002447 1.2e-07 59.7 81 40.7
Nitab4.5_0001250g0010 Nicotiana tabacum HOM05D001120 ORTHO05D002447 1.2e-07 59.7 62 48.4
RcHm_v2.0_Chr2g0135961 Rosa chinensis HOM05D001120 ORTHO05D002447 1.2e-07 59.7 80 48.8
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 1.2e-07 59.7 79 45.6
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 1.2e-07 59.7 79 45.6
AL4G39560 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 1.6e-07 59.3 80 41.2
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 1.6e-07 59.3 48 60.4
ClCG05G007570 Citrullus lanatus HOM05D001120 ORTHO05D002447 2.1e-07 58.9 79 46.8
FAN09G4531 Fragaria x ananassa HOM05D001120 ORTHO05D002447 2.1e-07 58.9 80 47.5
QL05p028937 Quercus lobata HOM05D001120 ORTHO05D002447 2.1e-07 58.9 80 46.2
CsaV3_3G016460 Cucumis sativus L. HOM05D001120 ORTHO05D002447 2.7e-07 58.5 53 54.7
Thhalv10017295m.g Eutrema salsugineum HOM05D001120 ORTHO05D002447 2.7e-07 58.5 80 42.5
SGA_v2.0_scaffold5G02678 Striga asiatica HOM05D001120 ORTHO05D002447 2.7e-07 58.5 80 40.0
unitig_22.g6612 Utricularia gibba HOM05D001120 ORTHO05D002447 2.7e-07 58.5 79 46.8
Nitab4.5_0000024g0220 Nicotiana tabacum HOM05D001120 ORTHO05D002447 3.6e-07 58.2 76 42.1
RcHm_v2.0_Chr1g0375361 Rosa chinensis HOM05D001120 ORTHO05D002447 3.6e-07 58.2 79 44.3
THA.LOC104815278 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 3.6e-07 58.2 80 42.5
Cc04_g04230 Coffea canephora HOM05D001120 ORTHO05D002447 4.7e-07 57.8 81 40.7
Gohir.A05G125700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 4.7e-07 57.8 80 41.2
Gohir.A05G125866 Gossypium hirsutum HOM05D001120 ORTHO05D002447 4.7e-07 57.8 80 41.2
Gohir.D05G126700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 4.7e-07 57.8 80 41.2
Gorai.009G130700 Gossypium raimondii HOM05D001120 ORTHO05D002447 4.7e-07 57.8 80 41.2
Nn2g12032 Nelumbo nucifera HOM05D001120 ORTHO05D002447 4.7e-07 57.8 80 42.5
AT2G41475 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 6.1e-07 57.4 80 40.0
Migut.I00781 Erythranthe guttata HOM05D001120 ORTHO05D002447 6.1e-07 57.4 81 43.2
Rhsim08G0214200 Rhododendron simsii HOM05D001120 ORTHO05D002447 6.1e-07 57.4 80 42.5
ClCG05G007560 Citrullus lanatus HOM05D001120 ORTHO05D002447 8.0e-07 57.0 79 43.0
Ciclev10026660m.g Citrus clementina HOM05D001120 ORTHO05D002447 8.0e-07 57.0 80 46.2
MELO3C006845.2 Cucumis melo HOM05D001120 ORTHO05D002447 8.0e-07 57.0 79 44.3
Lsat_1_v5_gn_4_88960 Lactuca sativa HOM05D001120 ORTHO05D002447 8.0e-07 57.0 79 40.5
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 1.0e-06 56.6 79 44.3
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.0e-06 56.6 81 43.2
GSVIVG01018477001 Vitis vinifera HOM05D001120 ORTHO05D002447 1.0e-06 56.6 80 46.2
A04p31640 Brassica napus HOM05D001120 ORTHO05D002447 1.4e-06 56.2 80 40.0
BraA04t18622Z Brassica rapa HOM05D001120 ORTHO05D002447 1.4e-06 56.2 80 40.0
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 41.2
Duzib192G0269 Durio zibethinus HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
FAN03G0491 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
FAN03G1813 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
FAN06G0686 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
FAN06G4829 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
FAN10G0638 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.8e-06 55.8 80 42.5
TPR.G37272 Trifolium pratense HOM05D001120 ORTHO05D002447 1.8e-06 55.8 79 39.2
Duzib235G0839 Durio zibethinus HOM05D001120 ORTHO05D002447 2.3e-06 55.5 79 43.0
FvH4_7g28400 Fragaria vesca HOM05D001120 ORTHO05D002447 2.3e-06 55.5 80 41.2
PSO339G5748 Papaver somniferum HOM05D001120 ORTHO05D002447 2.3e-06 55.5 71 42.3
Sabra06G0052100 Salix brachista HOM05D001120 ORTHO05D002447 2.3e-06 55.5 80 40.0
TAR645G0006 Trochodendron aralioides HOM05D001120 ORTHO05D002447 2.3e-06 55.5 80 47.5
Lsat_1_v5_gn_5_131260 Lactuca sativa HOM05D001120 ORTHO05D002447 3.0e-06 55.1 72 41.7
PSO455G0274 Papaver somniferum HOM05D001120 ORTHO05D002447 3.0e-06 55.1 78 43.6
Prupe.2G284100 Prunus persica HOM05D001120 ORTHO05D002447 3.0e-06 55.1 79 41.8
Actinidia40472 Actinidia chinensis HOM05D001120 ORTHO05D002447 4.0e-06 54.7 80 37.5
MELO3C006844.2 Cucumis melo HOM05D001120 ORTHO05D002447 4.0e-06 54.7 79 41.8
Glyma.13G364801 Glycine max HOM05D001120 ORTHO05D002447 4.0e-06 54.7 71 42.3
Potri.006G069800 Populus trichocarpa HOM05D001120 ORTHO05D002447 4.0e-06 54.7 73 43.8
Lj3g0003878 Lotus japonicus HOM05D001120 ORTHO05D002447 5.2e-06 54.3 71 40.8
MD01G1187700 Malus domestica HOM05D001120 ORTHO05D002447 5.2e-06 54.3 80 38.8
Aqoxy7G03703 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 6.8e-06 53.9 80 38.8
Carub.0004s2377 Capsella rubella HOM05D001120 ORTHO05D002447 6.8e-06 53.9 80 41.2
Ciclev10009669m.g Citrus clementina HOM05D001120 ORTHO05D002447 6.8e-06 53.9 92 40.2
ECA232G3997 Erigeron canadensis HOM05D001120 ORTHO05D002447 6.8e-06 53.9 65 43.1
TAR383G0395 Trochodendron aralioides HOM05D001120 ORTHO05D002447 6.8e-06 53.9 80 45.0
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.8e-06 53.9 76 42.1


User provided reference genes

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