Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1430.2 708 100.0
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1341.6 711 92.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 0.0e+00 1330.5 710 92.3
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 0.0e+00 1240.3 712 85.3
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1214.1 714 83.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1206.4 714 82.6
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1201.8 711 83.7
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 0.0e+00 1189.1 710 83.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 0.0e+00 1085.9 566 93.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1085.5 714 73.5
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1082.8 714 73.1
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 0.0e+00 1077.0 646 81.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1076.2 712 73.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.4e-311 1071.2 706 74.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.4e-311 1070.8 716 72.5
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 2.4e-309 1065.1 716 72.6
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 4.0e-309 1064.3 708 73.2
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.0e-308 1062.0 709 73.9
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 5.8e-308 1060.4 717 71.1
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 5.8e-308 1060.4 712 71.9
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.9e-306 1055.4 705 73.2
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.6e-305 1052.4 704 72.2
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 3.5e-305 1051.2 712 71.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 2.3e-304 1048.5 708 71.0
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 2.5e-303 1045.0 707 72.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 5.7e-303 1043.9 707 72.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 7.4e-303 1043.5 714 72.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 5.9e-300 1033.9 708 71.3
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 7.7e-300 1033.5 710 71.1
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.3e-295 1018.1 707 69.9
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 707 70.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 2.8e-294 1015.0 707 69.6
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 2.2e-291 1005.4 709 69.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.6e-289 998.0 709 67.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.7e-289 997.7 709 68.3
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.9e-288 994.6 718 68.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.1e-287 993.0 699 68.1
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.3e-286 989.6 709 67.7
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.7e-286 988.0 709 67.1
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.5e-284 982.6 709 67.3
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 4.5e-284 981.1 709 67.1
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.0e-283 979.9 707 66.9
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.2e-283 978.8 715 67.4
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.9e-282 975.7 704 66.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 9.4e-282 973.4 665 72.2
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.7e-281 971.1 695 67.5
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.0e-279 965.7 631 73.7
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 3.7e-278 961.4 714 66.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 8.2e-278 960.3 718 67.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.3e-275 953.0 705 64.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.3e-275 953.0 697 65.3
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.7e-275 952.6 700 65.7
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.7e-275 952.6 712 65.9
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.2e-274 948.0 713 67.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 7.2e-274 947.2 712 66.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 9.4e-274 946.8 709 64.6
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.6e-273 944.9 714 65.5
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 6.1e-273 944.1 709 64.7
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 8.0e-273 943.7 708 64.3
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.0e-272 943.3 713 64.8
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 4.0e-272 941.4 689 67.8
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 5.2e-272 941.0 715 63.6
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 8.8e-272 940.3 707 64.1
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 8.8e-272 940.3 705 64.0
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.2e-271 939.9 711 63.9
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-271 939.1 707 64.4
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.2e-270 935.6 707 63.8
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 3.7e-270 934.9 650 70.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 4.8e-270 934.5 708 64.0
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-269 933.3 708 64.0
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.8e-269 932.6 708 63.7
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.4e-269 932.2 720 63.2
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 9.1e-269 930.2 697 66.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 5.9e-268 927.5 687 64.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 8.5e-267 923.7 701 64.5
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 4.2e-266 921.4 719 63.3
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 8.0e-265 917.1 709 64.2
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.0e-264 914.8 717 62.8
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.9e-262 907.9 626 70.4
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.8e-261 906.0 713 61.9
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 7.2e-258 894.0 721 62.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 9.5e-258 893.6 725 60.3
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.6e-257 892.9 629 68.7
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 3.6e-257 891.7 706 63.3
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.5e-255 886.3 625 68.5
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.4e-253 877.9 975 50.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.3e-251 872.5 589 69.8
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.3e-251 872.5 713 60.9
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.9e-251 872.1 723 58.5
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 6.6e-251 870.9 709 62.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.9e-250 869.4 542 76.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.2e-245 850.5 581 69.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.5e-239 833.2 707 59.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.4e-231 805.4 854 50.1
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.7e-219 766.5 969 47.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.4e-207 725.7 691 55.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.5e-194 683.7 453 72.8
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.2e-183 647.5 364 84.6
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 8.8e-179 631.3 736 46.5
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 3.6e-172 609.4 466 62.9
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.2e-157 559.7 702 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.5e-149 533.5 626 45.0
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 3.2e-136 490.0 275 86.2
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.4e-130 469.5 432 54.9
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.6e-124 451.1 367 59.9
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 6.0e-103 379.4 265 71.3
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.2e-95 355.1 260 68.5
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 6.0e-95 352.8 226 77.4
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 4.0e-83 313.5 291 56.7
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.8e-68 264.2 278 50.4
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 8.5e-65 252.7 167 76.0
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.3e-60 238.8 149 71.1
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.9e-49 201.1 154 67.5
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.9e-48 198.4 255 44.7
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.3e-43 180.3 225 44.4
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.0e-43 179.9 255 42.0
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.9e-32 145.2 155 46.5
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.2e-31 142.5 98 77.6
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 2.1e-31 141.7 117 66.7
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.6e-31 141.0 109 61.5
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.0e-31 139.8 115 67.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.4e-27 128.3 107 63.6
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.5e-26 124.4 122 54.1
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 5.0e-25 120.6 104 67.3
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.0e-25 120.6 98 56.1
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 3.3e-24 117.9 86 60.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-23 115.5 169 37.9
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 3.0e-22 111.3 109 51.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.8e-19 102.1 99 53.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.4e-19 101.7 64 71.9
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 3.2e-19 101.3 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 9.2e-19 99.8 109 47.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 3.5e-18 97.8 75 69.3
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.6e-18 97.4 61 72.1
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.5e-16 92.4 92 50.0
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.6e-15 89.0 98 53.1
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 5.2e-14 84.0 163 30.7
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 6.8e-14 83.6 77 61.0
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.6e-13 81.6 85 50.6
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 4.4e-13 80.9 58 62.1
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 7.5e-13 80.1 53 75.5
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 3.7e-12 77.8 57 63.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 3.7e-12 77.8 54 59.3
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 4.9e-12 77.4 129 36.4
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 8.3e-12 76.6 57 63.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 8.3e-12 76.6 57 63.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.4e-11 75.1 70 55.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 3.2e-11 74.7 104 51.0
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-11 74.3 93 41.9
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-10 72.0 57 59.6
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 5.0e-09 67.4 48 64.6
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.2e-07 62.8 37 73.0
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 4.7e-07 60.8 349 19.5
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.8e-06 58.9 45 62.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 6.8e-06 57.0 45 60.0
CDE08G0658 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.9e-06 56.6 65 46.2


User provided reference genes

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