Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.0e-99 366.7 183 100.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 4.8e-97 357.8 183 97.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 2.0e-90 335.9 183 88.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 2.0e-90 335.9 183 88.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 88.5
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 88.0
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 88.0
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 88.5
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 84.7
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 84.2
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 87.4
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 89.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 2.3e-86 322.4 182 83.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.7
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.7
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.2
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 85.2
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 82.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 82.5
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 4.2e-85 318.2 182 83.5
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.5
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 80.9
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 81.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 80.9
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 80.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 80.3
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 80.3
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 80.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.6e-84 316.2 182 82.4
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.5
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 80.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 80.3
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.8e-84 315.5 182 81.9
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 81.4
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 80.3
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 82.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 8.0e-84 313.9 181 81.8
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.0
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 80.9
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 80.3
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 79.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 79.2
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 79.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 79.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.8
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 80.9
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 80.9
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 80.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.2
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 80.3
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 79.8
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 79.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 80.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 78.7
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 78.7
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 79.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 79.8
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 79.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.8
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.2
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 81.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 78.7
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 78.1
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 77.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 80.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 79.6
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 80.1
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 78.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.1e-80 303.5 190 77.4
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 79.6
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 81.2
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 79.0
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 77.6
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 79.6
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 78.1
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 77.6
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 79.8
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 79.2
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 78.5
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 79.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 77.6
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 5.9e-79 297.7 184 77.2
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 5.9e-79 297.7 182 76.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 77.0
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 74.9
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 74.3
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 79.0
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 76.5
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 6.6e-78 294.3 181 79.0
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 78.5
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.3e-77 290.8 184 75.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.2e-76 290.0 183 74.9
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.8e-76 288.9 155 88.4
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.6e-76 288.5 184 75.0
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 4.7e-76 288.1 184 75.0
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.8e-75 286.2 183 73.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.3e-75 285.8 183 73.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 71.0
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 71.6
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 5.8e-74 281.2 182 73.6
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 7.5e-74 280.8 183 71.6
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.7e-73 279.6 228 62.7
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 1.7e-73 279.6 184 73.4
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.2e-73 279.3 183 71.6
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.0e-71 272.7 183 68.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 2.0e-71 272.7 184 70.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.0e-70 270.4 182 69.8
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.7e-70 269.6 185 70.3
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 6.6e-70 267.7 152 84.9
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.3e-69 265.0 152 79.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 2.1e-68 262.7 181 69.1
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.1e-68 262.7 183 71.6
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 3.1e-67 258.8 219 60.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.8e-67 257.7 155 78.1
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 3.7e-65 251.9 183 69.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.9e-61 239.6 138 81.2
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.9e-61 239.6 181 66.9
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.5e-61 239.2 181 66.3
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.1e-60 236.1 188 64.9
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-58 228.4 183 62.8
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.2e-55 220.3 138 72.5
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.5e-55 218.8 175 64.6
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.5e-53 212.6 155 65.8
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.2e-52 208.0 183 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.2e-50 203.8 152 64.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.6e-50 202.6 179 60.3
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 3.4e-50 202.2 158 63.3
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 7.1e-48 194.5 186 51.6
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.0e-46 190.7 149 62.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.5e-45 186.0 102 86.3
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 9.0e-43 177.6 102 79.4
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-42 177.2 158 58.2
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.4e-40 170.2 132 59.1
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.9e-40 169.9 100 79.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.9e-40 169.9 100 77.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.2e-40 169.1 99 77.8
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 5.1e-38 161.8 106 70.8
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-37 160.6 134 61.9
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.0e-35 151.0 105 67.6
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.6e-31 138.7 99 65.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.3e-30 137.1 81 81.5
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.5e-29 133.7 78 79.5
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.6e-29 131.7 81 79.0
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.3e-27 125.2 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.7e-25 120.2 106 58.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 4.8e-20 102.1 68 66.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.2e-17 93.2 52 82.7
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.1e-16 90.9 106 48.1
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.7e-15 86.3 187 36.9
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 2.7e-07 59.7 181 30.9
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 6.1e-07 58.5 105 30.5
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.8e-06 57.0 81 42.0
Atru.chr8.138 Acer truncatum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 30.9
Atru.chr9.2279 Acer truncatum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 97 30.9
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 8.8e-06 54.7 37 62.2
SMO268G0058 Selaginella moellendorffii HOM05D001645 ORTHO05D001749 8.8e-06 54.7 157 23.6
TPR.G11849 Trifolium pratense HOM05D001645 ORTHO05D001749 8.8e-06 54.7 116 30.2
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 8.8e-06 54.7 145 25.5


User provided reference genes

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