Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.5e-109 398.3 201 100.0
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 9.6e-22 107.8 60 95.0
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 9.0e-20 101.3 60 88.3
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 2.0e-19 100.1 60 86.7
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 6.4e-18 95.1 60 81.7
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 1.1e-17 94.4 60 81.7
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 4.2e-17 92.4 60 76.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 9.3e-17 91.3 60 78.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 9.3e-17 91.3 60 78.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 3.5e-16 89.4 60 75.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 7.8e-16 88.2 60 71.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 7.3e-14 81.6 59 69.5
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.6e-13 80.5 59 71.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 2.8e-13 79.7 59 71.2
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.8e-13 79.7 80 57.5
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.8e-13 79.0 67 61.2
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 4.8e-13 79.0 60 66.7
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 6.2e-13 78.6 59 67.8
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 8.1e-13 78.2 59 71.2
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 8.1e-13 78.2 59 67.8
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 1.8e-12 77.0 59 71.2
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 2.4e-12 76.6 59 67.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 2.4e-12 76.6 59 66.1
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 3.1e-12 76.3 59 66.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 3.1e-12 76.3 59 64.4
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 3.1e-12 76.3 59 66.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 3.1e-12 76.3 59 66.1
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 3.1e-12 76.3 60 65.0
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 3.1e-12 76.3 60 65.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 3.1e-12 76.3 60 63.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 4.0e-12 75.9 59 67.8
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 4.0e-12 75.9 59 67.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 4.0e-12 75.9 59 66.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 4.0e-12 75.9 60 66.7
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 6.9e-12 75.1 59 67.8
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 6.9e-12 75.1 59 67.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 6.9e-12 75.1 59 64.4
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 6.9e-12 75.1 59 66.1
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 9.0e-12 74.7 59 66.1
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 1.2e-11 74.3 60 65.0
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 1.2e-11 74.3 103 45.6
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 1.2e-11 74.3 60 63.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 1.2e-11 74.3 59 64.4
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 2.6e-11 73.2 59 64.4
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 2.6e-11 73.2 60 58.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 3.4e-11 72.8 59 62.7
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 4.5e-11 72.4 59 64.4
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 4.5e-11 72.4 59 64.4
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 4.5e-11 72.4 60 63.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 4.5e-11 72.4 60 65.0
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 4.5e-11 72.4 60 66.7
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 4.5e-11 72.4 60 61.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 4.5e-11 72.4 59 64.4
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 5.8e-11 72.0 59 62.7
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 5.8e-11 72.0 60 61.7
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 7.6e-11 71.6 60 63.3
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 7.6e-11 71.6 59 64.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.6e-11 71.6 59 66.1
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 7.6e-11 71.6 60 63.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 7.6e-11 71.6 59 62.7
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 9.9e-11 71.2 59 64.4
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.9e-11 71.2 57 66.7
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 9.9e-11 71.2 59 64.4
TPR.G40130 Trifolium pratense HOM05D004422 ORTHO05D013213 9.9e-11 71.2 44 88.6
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.3e-10 70.9 59 61.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-10 70.9 59 61.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.3e-10 70.9 60 65.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 1.3e-10 70.9 60 58.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 1.3e-10 70.9 57 63.2
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 1.7e-10 70.5 59 62.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.7e-10 70.5 59 62.7
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 1.7e-10 70.5 60 60.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.7e-10 70.5 60 60.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.7e-10 70.5 59 59.3
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 2.2e-10 70.1 60 61.7
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 2.9e-10 69.7 60 60.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 3.8e-10 69.3 60 61.7
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 3.8e-10 69.3 59 59.3
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.8e-10 69.3 60 60.0
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.9e-10 68.9 59 59.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 4.9e-10 68.9 59 62.7
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 4.9e-10 68.9 60 55.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 4.9e-10 68.9 59 61.0
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 6.4e-10 68.6 59 59.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 8.4e-10 68.2 60 58.3
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 8.4e-10 68.2 59 59.3
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 8.4e-10 68.2 59 59.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.4e-09 67.4 59 59.3
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 1.4e-09 67.4 60 55.0
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 2.4e-09 66.6 61 57.4
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 2.4e-09 66.6 58 58.6
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 2.4e-09 66.6 60 58.3
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 5.4e-09 65.5 59 55.9
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 5.4e-09 65.5 59 57.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 3.5e-08 62.8 60 55.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 4.6e-08 62.4 59 54.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 6.0e-08 62.0 60 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 7.9e-08 61.6 58 53.4
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.0e-07 61.2 59 54.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.7e-07 58.5 59 45.8
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 1.1e-06 57.8 59 50.8
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.5e-06 57.4 58 51.7
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-06 57.0 106 40.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-06 57.0 106 40.6
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 1.9e-06 57.0 58 53.4
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.6e-06 55.5 106 39.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 5.6e-06 55.5 58 50.0
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 9.6e-06 54.7 106 39.6
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 9.6e-06 54.7 58 50.0


User provided reference genes

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