Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22345 Trifolium pratense HOM05D004050 ORTHO05D005162 1.7e-151 539.3 271 100.0
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 3.0e-55 219.5 200 64.0
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 4.0e-55 219.2 200 63.5
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 4.0e-55 219.2 200 63.5
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 5.2e-55 218.8 156 76.3
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 6.8e-55 218.4 200 62.5
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 1.5e-54 217.2 200 62.0
Gorai.007G105300 Gossypium raimondii HOM05D004050 ORTHO05D005162 1.5e-54 217.2 156 75.0
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 1.5e-54 217.2 200 63.0
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 1.5e-54 217.2 200 62.5
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 2.0e-54 216.9 156 75.6
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 2.0e-54 216.9 156 75.0
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 3.4e-54 216.1 200 63.0
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 3.4e-54 216.1 156 74.4
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 3.4e-54 216.1 154 76.0
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 4.4e-54 215.7 156 75.0
vmacro12382 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 5.7e-54 215.3 154 75.3
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 7.5e-54 214.9 154 75.3
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 7.5e-54 214.9 200 61.5
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 9.8e-54 214.5 200 61.0
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 1.3e-53 214.2 156 75.0
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 1.7e-53 213.8 156 74.4
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 1.7e-53 213.8 185 64.9
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 2.2e-53 213.4 156 73.1
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 2.2e-53 213.4 200 60.5
CiPaw.05G179000 Carya illinoinensis HOM05D004050 ORTHO05D005162 2.8e-53 213.0 147 76.2
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 3.7e-53 212.6 156 73.7
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 4.9e-53 212.2 200 61.5
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 4.9e-53 212.2 154 74.0
Haze_19365 Corylus avellana HOM05D004050 ORTHO05D005162 4.9e-53 212.2 156 73.1
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 4.9e-53 212.2 200 60.5
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 4.9e-53 212.2 174 70.1
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 6.3e-53 211.8 156 73.1
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 6.3e-53 211.8 156 74.4
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 8.3e-53 211.5 147 75.5
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 1.1e-52 211.1 147 75.5
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 1.1e-52 211.1 153 74.5
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 1.1e-52 211.1 154 74.7
SalBow3G2972 Salvia bowleyana HOM05D004050 ORTHO05D005162 1.1e-52 211.1 147 75.5
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 1.1e-52 211.1 147 75.5
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 1.1e-52 211.1 147 75.5
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 1.4e-52 210.7 156 73.1
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 1.4e-52 210.7 156 73.1
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 1.4e-52 210.7 200 60.0
Sc01g0003000 Simmondsia chinensis HOM05D004050 ORTHO05D005162 1.4e-52 210.7 173 67.6
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 1.8e-52 210.3 200 61.0
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 1.8e-52 210.3 156 73.7
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 4.1e-52 209.1 154 74.0
CANSAT56G4345 Cannabis sativa HOM05D004050 ORTHO05D005162 4.1e-52 209.1 156 71.8
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 4.1e-52 209.1 156 71.8
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 4.1e-52 209.1 200 61.0
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 4.1e-52 209.1 154 73.4
Solyc01g095480.4 Solanum lycopersicum HOM05D004050 ORTHO05D005162 4.1e-52 209.1 156 73.7
Sopen01g039230 Solanum pennellii HOM05D004050 ORTHO05D005162 4.1e-52 209.1 156 73.7
PGSC0003DMG400000206 Solanum tuberosum HOM05D004050 ORTHO05D005162 4.1e-52 209.1 156 73.7
PSO782G0629 Papaver somniferum HOM05D004050 ORTHO05D005162 5.4e-52 208.8 155 71.6
ATR0772G162 Amborella trichopoda HOM05D004050 ORTHO05D005162 7.0e-52 208.4 159 68.6
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 7.0e-52 208.4 156 71.8
DCAR_006962 Daucus carota HOM05D004050 ORTHO05D005162 7.0e-52 208.4 198 60.1
Rhsim07G0007400 Rhododendron simsii HOM05D004050 ORTHO05D005162 7.0e-52 208.4 158 73.4
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 9.2e-52 208.0 154 73.4
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 9.2e-52 208.0 147 74.1
Sabra14G0068900 Salix brachista HOM05D004050 ORTHO05D005162 9.2e-52 208.0 228 57.9
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 9.2e-52 208.0 156 72.4
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 9.2e-52 208.0 200 61.0
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 1.2e-51 207.6 200 60.5
MD16G1191800 Malus domestica HOM05D004050 ORTHO05D005162 1.2e-51 207.6 156 71.2
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 1.6e-51 207.2 154 72.1
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 1.6e-51 207.2 185 63.8
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 2.0e-51 206.8 156 72.4
CAN.G986.49 Capsicum annuum HOM05D004050 ORTHO05D005162 2.7e-51 206.5 156 73.1
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 2.7e-51 206.5 147 74.1
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 3.5e-51 206.1 200 59.0
AUR62023504 Chenopodium quinoa HOM05D004050 ORTHO05D005162 5.9e-51 205.3 239 53.6
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 7.8e-51 204.9 147 73.5
FAN15G2127 Fragaria x ananassa HOM05D004050 ORTHO05D005162 7.8e-51 204.9 147 73.5
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 7.8e-51 204.9 147 73.5
Peaxi162Scf01012g00123 Petunia axillaris HOM05D004050 ORTHO05D005162 7.8e-51 204.9 154 72.7
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 7.8e-51 204.9 147 73.5
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 7.8e-51 204.9 147 73.5
PSO063G2231 Papaver somniferum HOM05D004050 ORTHO05D005162 1.0e-50 204.5 155 70.3
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 1.3e-50 204.1 147 72.8
FvH4_4g15330 Fragaria vesca HOM05D004050 ORTHO05D005162 1.7e-50 203.8 147 72.8
FAN12G2119 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.7e-50 203.8 147 72.8
FAN20G0802 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.7e-50 203.8 147 72.8
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 1.7e-50 203.8 200 60.0
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 2.3e-50 203.4 214 57.0
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 5.0e-50 202.2 161 69.6
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 6.6e-50 201.8 147 72.8
arahy.Tifrunner.gnm1.ann1.XQ2X1T Arachis hypogaea HOM05D000273 ORTHO05D005162 1.1e-49 201.1 186 60.2
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 1.1e-49 201.1 156 69.9
FAN07G1668 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.1e-49 201.1 147 72.8
SHI28346 Sapria himalayana HOM05D004050 ORTHO05D005162 1.1e-49 201.1 156 71.2
PSO541G3611 Papaver somniferum HOM05D004050 ORTHO05D005162 2.5e-49 199.9 147 70.7
Os09g0252000 Oryza sativa ssp. japonica HOM05D004050 ORTHO05D005162 5.6e-49 198.7 154 70.1
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 7.3e-49 198.4 237 53.2
RcHm_v2.0_Chr6g0271671 Rosa chinensis HOM05D004050 ORTHO05D005162 9.5e-49 198.0 226 54.0
PSO675G5387 Papaver somniferum HOM05D004050 ORTHO05D005162 2.8e-48 196.4 155 67.7
Zm00001eb343390 Zea mays HOM05D004050 ORTHO05D005162 3.6e-48 196.1 154 70.1
THA.LOC104817331 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 5.2e-47 192.2 154 68.2
Aa31LG10G15380 Aethionema arabicum HOM05D004050 ORTHO05D005162 2.0e-46 190.3 155 68.4
Medtr3g072850 Medicago truncatula HOM05D004050 ORTHO05D005162 2.0e-46 190.3 144 71.5
THA.LOC104805548 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 2.6e-46 189.9 154 67.5
AL5G44010 Arabidopsis lyrata HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 67.1
AT3G61620 Arabidopsis thaliana HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 67.1
BcaB02g07365 Brassica carinata HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
BcaC08g45143 Brassica carinata HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
A07p25630 Brassica napus HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
A09p53690 Brassica napus HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
C06p27620 Brassica napus HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
BraA07t30204Z Brassica rapa HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
BraA09t40791Z Brassica rapa HOM05D004050 ORTHO05D005162 7.5e-46 188.3 155 66.5
Sp5g01790 Schrenkiella parvula HOM05D004050 ORTHO05D005162 9.8e-46 188.0 155 66.5
SMO196G0022 Selaginella moellendorffii HOM05D004050 ORTHO05D005162 9.8e-46 188.0 210 51.9
Atru.chr5.615 Acer truncatum HOM05D004050 ORTHO05D005162 1.3e-45 187.6 123 80.5
CARHR171930 Cardamine hirsuta HOM05D004050 ORTHO05D005162 1.3e-45 187.6 155 66.5
BcaC07g40663 Brassica carinata HOM05D004050 ORTHO05D005162 1.7e-45 187.2 155 65.8
C08p36470 Brassica napus HOM05D004050 ORTHO05D005162 1.7e-45 187.2 155 65.8
BolC6t37931H Brassica oleracea HOM05D004050 ORTHO05D005162 1.7e-45 187.2 155 65.8
BolC8t51230H Brassica oleracea HOM05D004050 ORTHO05D005162 1.7e-45 187.2 155 65.8
Carub.0006s1683 Capsella rubella HOM05D004050 ORTHO05D005162 1.7e-45 187.2 155 66.5
Thhalv10006211m.g Eutrema salsugineum HOM05D004050 ORTHO05D005162 3.7e-45 186.0 155 65.8
Carub.0005s2831 Capsella rubella HOM05D004050 ORTHO05D005162 4.9e-45 185.7 155 65.8
Mapoly0020s0167 Marchantia polymorpha HOM05D004050 ORTHO05D005162 2.0e-43 180.3 156 62.2
AagrBONN_evm.TU.Sc2ySwM_369.383 Anthoceros agrestis HOM05D004050 ORTHO05D005162 3.5e-43 179.5 156 62.2
SEGI_08389 Sequoiadendron giganteum HOM05D004050 ORTHO05D005162 1.3e-42 177.6 126 73.0
MD13G1191700 Malus domestica HOM05D004050 ORTHO05D005162 2.3e-42 176.8 130 73.1
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 3.3e-41 172.9 200 54.0
CBR_g46394 Chara braunii HOM05D004050 ORTHO05D005162 9.5e-41 171.4 156 57.7
Pp3s48_50 Physcomitrium patens HOM05D004050 ORTHO05D005162 1.2e-40 171.0 147 60.5
TAR636G1595 Trochodendron aralioides HOM05D004050 ORTHO05D005162 4.7e-40 169.1 156 63.5
C06p27780 Brassica napus HOM05D004050 ORTHO05D005162 2.3e-39 166.8 147 63.3
BolC6t37946H Brassica oleracea HOM05D004050 ORTHO05D005162 2.3e-39 166.8 147 63.9
Dinv32549 Davidia involucrata HOM05D004050 ORTHO05D005162 3.4e-38 162.9 117 74.4
FvH4_2g30520 Fragaria vesca HOM05D004050 ORTHO05D005162 4.9e-37 159.1 144 63.9
Cre06.g284500 Chlamydomonas reinhardtii HOM05D004050 ORTHO05D005162 1.3e-34 151.0 154 52.6
FAN24G2737 Fragaria x ananassa HOM05D004050 ORTHO05D005162 8.9e-31 138.3 144 54.2
MCO13G612 Micromonas commoda HOM05D004050 ORTHO05D005162 1.3e-29 134.4 145 45.5
Nitab4.5_0007386g0030 Nicotiana tabacum HOM05D004050 ORTHO05D005162 3.9e-26 122.9 76 82.9
HPP92_009158 Vanilla planifolia HOM05D004050 ORTHO05D005162 1.1e-23 114.8 77 76.6
BcaC08g45155 Brassica carinata HOM05D004050 ORTHO05D005162 2.0e-22 110.5 70 81.4
Peaxi162Scf01533g00027 Petunia axillaris HOM05D004050 ORTHO05D005162 8.4e-21 105.1 116 56.0
Actinidia28492 Actinidia chinensis HOM05D004050 ORTHO05D005162 4.6e-19 99.4 63 81.0
PRCOL_00005249 Prasinoderma coloniale HOM05D004050 ORTHO05D005162 9.9e-14 81.6 114 36.8
Cfa022832 Carpinus fangiana HOM05D004050 ORTHO05D005162 1.1e-12 78.2 133 36.1
Pp3c3_18310 Physcomitrium patens HOM05D005157 ORTHO05D006652 8.7e-10 68.6 104 31.7
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 5.6e-09 65.9 99 35.4
Prupe.6G104100 Prunus persica HOM05D005157 ORTHO05D006652 3.6e-08 63.2 104 32.7
arahy.Tifrunner.gnm1.ann1.YN12K8 Arachis hypogaea HOM05D004050 ORTHO05D005162 4.8e-08 62.8 124 37.9
PSO801G0513 Papaver somniferum HOM05D005157 ORTHO05D006652 1.4e-07 61.2 104 32.7
Mapoly0055s0093 Marchantia polymorpha HOM05D005157 ORTHO05D006652 2.4e-07 60.5 93 33.3
PSO339G6554 Papaver somniferum HOM05D005157 ORTHO05D006652 3.1e-07 60.1 104 31.7
Atru.chr3.3604 Acer truncatum HOM05D005157 ORTHO05D006652 6.9e-07 58.9 114 31.6
CANSAT78G0434 Cannabis sativa HOM05D005157 ORTHO05D006652 1.2e-06 58.2 104 29.8
Hund01506 Selenicereus undatus HOM05D005157 ORTHO05D006652 1.5e-06 57.8 104 29.8
arahy.Tifrunner.gnm1.ann1.PZ74PR Arachis hypogaea HOM05D005157 ORTHO05D006652 2.0e-06 57.4 135 25.9
Zm00001eb328370 Zea mays HOM05D005157 ORTHO05D006652 2.0e-06 57.4 115 27.0
MCO07G684 Micromonas commoda HOM05D005157 ORTHO05D006652 2.6e-06 57.0 98 29.6
Os03g0844450 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 2.6e-06 57.0 152 25.0
ATR0048G044 Amborella trichopoda HOM05D005157 ORTHO05D006652 4.5e-06 56.2 104 29.8
PRCOL_00002486 Prasinoderma coloniale HOM05D005157 ORTHO05D006652 4.5e-06 56.2 114 29.8
SHI32600 Sapria himalayana HOM05D005157 ORTHO05D006652 4.5e-06 56.2 104 29.8
arahy.Tifrunner.gnm1.ann1.7C35UG Arachis hypogaea HOM05D005157 ORTHO05D006652 5.8e-06 55.8 104 27.9
FAN16G1661 Fragaria x ananassa HOM05D005157 ORTHO05D006652 5.8e-06 55.8 104 30.8
FAN25G2587 Fragaria x ananassa HOM05D005157 ORTHO05D006652 5.8e-06 55.8 113 29.2
Nn2g10829 Nelumbo nucifera HOM05D005157 ORTHO05D006652 5.8e-06 55.8 102 30.4
Os08g0116800 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 5.8e-06 55.8 152 24.3
CDE03G0292 Ceratophyllum demersum HOM05D005157 ORTHO05D006652 7.6e-06 55.5 102 29.4
TPR.G6155 Trifolium pratense HOM05D005157 ORTHO05D006652 7.6e-06 55.5 114 29.8
Cfa011300 Carpinus fangiana HOM05D005157 ORTHO05D006652 9.9e-06 55.1 104 29.8
Haze_23783 Corylus avellana HOM05D005157 ORTHO05D006652 9.9e-06 55.1 104 29.8
VMungo1127G1275 Vigna mungo HOM05D005157 ORTHO05D006652 9.9e-06 55.1 104 27.9


User provided reference genes

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