Gene: Os03g0844450

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os03g0844450
  • Transcript Identifier Os03t0844450-01
  • Gene Type Coding gene
  • Location chr03 : 35494307-35497455 : positive

Gene Family Information

  • ID HOM05D005157
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os03t0844450-01
  • MSU-ID LOC_Os03g62720.2
  • MSU-ID LOC_Os03g62720.3
  • MSU-ID LOC_Os03g62720.1
  • uniprot Q75LC8

Descriptions

  • Description Similar to 3' exoribonuclease family domain 1-containing protein.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071028
IBA
GOA Databasenuclear mRNA surveillance
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0016075
IBA
GOA DatabaserRNA catabolic process
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT4G27490
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G27490

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT4G27490

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0005730
IBA
GOA Databasenucleolus
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G27490
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G27490

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR027408 PNPase/RNase PH domain superfamily
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
Mapman id Description
16.4.1.1.9 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component MTR3/RRP41L