Gene: PGSC0003DMG400000206

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400000206
  • Transcript Identifier PGSC0003DMT400000592
  • Gene Type Coding gene
  • Location ST4.03ch01 : 73065184-73069679 : negative

Gene Family Information

  • ID HOM05D004050
  • #Genes/#Species 173/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37438395
  • id PGSC0003DMG400000206.v4.03
  • uniprot M0ZGZ8

Descriptions

  • Description Exosome complex exonuclease RRP41
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0016075
IBA
GOA DatabaserRNA catabolic process
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0071028
IBA
GOA Databasenuclear mRNA surveillance

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IBA
GOA Databasenucleolus
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G61620

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR027408 PNPase/RNase PH domain superfamily
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR015847 Exoribonuclease, phosphorolytic domain 2
Mapman id Description
16.4.1.1.2 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP41