Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.1e-309 1065.8 536 100.0
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.3e-251 872.8 536 80.4
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.4e-232 809.7 533 75.8
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 7.0e-205 717.6 538 66.5
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 3.9e-203 711.8 538 65.2
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 8.6e-203 710.7 540 65.4
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.8e-199 698.0 535 65.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 4.7e-193 678.3 538 63.0
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.1e-192 677.2 534 63.1
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.4e-157 560.5 539 57.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.4e-157 560.5 540 51.9
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.5e-154 549.7 543 52.1
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 2.4e-152 543.1 534 53.0
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.4e-152 543.1 544 51.7
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.7e-150 537.0 535 52.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 5.0e-150 535.4 534 52.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.5e-149 531.9 544 49.3
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.6e-148 530.4 539 51.8
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 7.9e-148 528.1 536 51.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 7.9e-148 528.1 536 55.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.3e-147 526.6 534 52.1
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 8.7e-147 524.6 539 51.8
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 4.3e-146 522.3 542 50.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 7.4e-146 521.5 535 51.4
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.6e-145 520.4 539 48.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 6.3e-145 518.5 535 50.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.3e-145 518.5 539 50.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 6.3e-145 518.5 547 48.8
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-144 517.7 534 50.9
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.8e-144 516.9 535 50.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 5.3e-144 515.4 537 50.3
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.0e-143 513.5 534 50.7
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 4.5e-143 512.3 536 50.0
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.5e-143 512.3 531 50.7
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.2e-142 510.0 544 49.1
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.5e-141 506.5 542 47.8
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.7e-140 503.1 540 49.6
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 4.6e-140 502.3 534 48.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 7.9e-140 501.5 540 48.3
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-138 497.7 526 49.8
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.4e-138 495.0 526 49.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 9.7e-138 494.6 536 47.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.7e-137 492.7 541 47.7
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.3e-136 488.8 532 49.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.5e-135 487.3 537 48.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 7.7e-135 485.0 541 47.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 5.0e-134 482.3 534 47.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.5e-134 481.9 536 47.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.1e-133 481.1 538 47.4
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.5e-133 479.9 534 47.8
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.2e-133 479.6 539 47.1
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.6e-132 477.2 533 49.3
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.6e-132 476.1 533 49.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.0e-131 474.6 539 46.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.3e-131 473.4 536 48.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 6.7e-131 471.9 540 47.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.1e-130 471.1 534 45.7
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.1e-130 471.1 540 47.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.5e-130 470.7 548 46.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 5.7e-130 468.8 537 48.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 7.4e-130 468.4 535 47.7
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 8.2e-129 464.9 452 55.1
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.8e-128 463.8 530 48.3
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.0e-128 461.8 548 45.6
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.6e-127 460.7 534 47.4
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.6e-127 459.9 535 46.9
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.2e-126 456.8 537 47.3
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 6.5e-126 455.3 552 45.5
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.2e-125 451.8 547 47.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.6e-124 450.7 540 44.8
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.3e-123 446.8 541 45.3
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 8.2e-121 438.3 545 46.2
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.4e-120 437.6 544 45.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-118 430.6 542 43.5
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.9e-118 429.9 557 42.9
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.8e-118 429.5 546 43.4
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.1e-117 427.9 537 43.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 4.2e-117 426.0 537 43.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 9.4e-117 424.9 538 43.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.2e-114 417.9 553 43.0
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.4e-114 416.0 449 50.3
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.7e-113 414.1 552 42.8
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.1e-112 411.4 526 42.8
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.1e-112 409.5 530 42.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.6e-111 407.5 545 43.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.9e-110 403.3 535 43.4
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 5.0e-110 402.5 530 43.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 4.7e-108 396.0 529 42.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.8e-107 394.0 529 42.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.0e-107 393.3 529 42.5
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.0e-107 393.3 529 42.5
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.0e-107 393.3 529 42.5
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.2e-105 387.1 542 41.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.8e-105 386.7 558 38.9
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.7e-103 380.2 529 40.8
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.1e-100 370.5 535 41.7
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.8e-99 367.5 546 40.1
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-98 364.8 599 37.7
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.5e-98 364.4 430 46.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.1e-96 358.2 529 39.9
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.4e-96 357.8 518 40.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 2.3e-91 340.5 413 44.3
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 8.6e-86 322.0 207 77.8
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.4e-82 309.7 581 36.1
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.2e-79 301.6 549 36.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.0e-79 299.3 486 38.1
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 4.7e-76 289.7 330 48.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-75 288.1 282 54.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.9e-73 279.6 431 39.4
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 6.4e-73 279.3 305 48.5
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 7.1e-72 275.8 619 31.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.9e-64 251.1 422 38.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.7e-63 247.3 281 45.6
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 5.3e-59 233.0 330 41.5
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.5e-58 229.9 231 48.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.4e-56 224.9 565 31.0
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 3.1e-51 207.2 569 30.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-45 188.0 198 44.9
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 3.7e-44 183.7 570 26.8
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-41 175.6 425 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.1e-35 155.6 541 26.4
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 5.3e-35 153.3 296 35.5
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 6.1e-31 139.8 324 31.2
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 3.3e-29 134.0 62 100.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-24 119.0 103 51.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.6e-21 107.8 127 46.5
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 4.1e-19 100.5 105 45.7
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 9.1e-19 99.4 222 34.2
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.5e-16 91.3 296 27.7
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 4.7e-15 87.0 97 47.4
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.1e-13 82.4 128 35.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.5e-13 82.0 147 34.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.0e-13 81.6 194 29.9
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-12 79.0 188 30.3
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-12 78.2 188 29.8
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.5e-10 70.9 69 53.6
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.2e-08 64.3 70 48.6
HanXRQChr04g0118861 Helianthus annuus HOM05D002702 ORTHO05D003416 9.4e-08 62.8 269 23.8
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-07 61.6 151 25.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.7e-07 60.5 65 43.1
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 4.7e-07 60.5 182 24.2
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-06 59.3 74 47.3
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.4e-06 58.9 158 27.8


User provided reference genes

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