Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 0.0e+00 1463.7 751 100.0
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 0.0e+00 1347.8 755 91.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 0.0e+00 1318.9 737 91.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1261.1 756 84.9
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 0.0e+00 1248.4 756 84.0
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 0.0e+00 1238.4 750 84.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 0.0e+00 1214.9 763 81.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1213.7 755 82.6
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1204.9 776 80.5
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1146.3 748 76.9
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1140.9 748 76.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1114.4 744 75.7
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 0.0e+00 1112.1 656 85.8
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1110.5 745 74.4
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1101.7 751 73.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 746 73.2
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1092.4 748 73.7
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1092.0 746 73.5
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1087.0 751 73.8
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1085.9 748 73.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1085.5 746 73.1
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1078.2 746 74.7
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1075.8 756 72.2
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 5.1e-312 1074.7 747 73.8
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.1e-312 1073.9 744 74.3
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 751 73.1
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.0e-311 1072.8 748 72.9
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 1.5e-311 1072.4 743 74.0
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.7e-310 1068.9 748 72.6
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.6e-310 1066.6 751 73.9
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 748 72.9
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.5e-309 1065.1 757 72.5
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.3e-309 1064.7 791 69.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.3e-309 1064.7 746 72.0
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 3.6e-308 1061.2 747 71.8
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 757 72.3
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 9.0e-307 1056.6 746 71.2
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 747 72.3
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 749 73.2
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 747 73.2
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 7.6e-306 1053.5 752 72.5
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.2e-305 1052.0 748 72.5
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 746 71.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 7.1e-304 1047.0 745 70.9
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 749 71.2
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 6.0e-303 1043.9 755 71.4
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 761 72.3
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 792 69.3
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 3.9e-302 1041.2 749 70.6
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.3e-300 1036.2 747 70.8
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 752 70.7
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 2.1e-300 1035.4 755 70.5
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 5.3e-299 1030.8 746 71.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.2e-298 1029.6 752 70.6
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.0e-298 1028.9 746 70.1
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 748 71.5
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 752 70.5
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.9e-297 1025.0 768 68.8
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 3.8e-297 1024.6 742 70.1
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 8.4e-297 1023.5 747 70.5
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.2e-296 1021.1 757 69.9
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 5.4e-296 1020.8 752 69.8
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 7.1e-296 1020.4 750 70.1
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 9.3e-296 1020.0 755 69.9
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 751 71.2
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 4.6e-295 1017.7 745 69.8
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 755 69.4
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 778 67.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 6.7e-294 1013.8 746 70.2
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 6.7e-294 1013.8 755 69.7
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 749 69.8
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 4.3e-293 1011.1 749 69.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 5.6e-293 1010.7 746 70.4
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 746 70.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 782 67.9
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.1e-292 1006.9 751 71.0
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.4e-291 1005.4 696 72.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 3.4e-290 1001.5 755 68.3
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 4.5e-290 1001.1 751 69.8
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.7e-289 999.2 755 67.7
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.1e-288 996.5 747 66.9
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.9e-288 995.7 742 68.3
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 7.4e-285 983.8 613 84.5
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.6e-282 975.3 714 70.7
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.2e-276 955.7 697 69.7
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.4e-275 953.0 713 68.0
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.3e-275 951.0 745 66.3
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.2e-274 949.9 744 65.3
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.7e-271 938.7 750 65.5
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 6.7e-270 934.1 658 74.2
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 8.2e-268 927.2 743 65.4
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 9.1e-267 923.7 655 72.1
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 4.1e-259 898.3 830 57.5
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 5.9e-250 867.8 746 59.5
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 4.7e-239 831.6 751 59.7
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 3.5e-234 815.5 535 76.4
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.5e-229 800.0 711 59.9
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 8.3e-228 794.3 502 80.1
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.5e-218 762.3 552 69.2
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.8e-215 752.7 555 69.0
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.5e-192 677.2 516 68.0
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.4e-179 633.3 609 55.2
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.4e-171 607.4 689 51.7
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.6e-165 586.6 452 64.8
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.3e-161 573.5 475 64.2
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 7.9e-154 548.5 431 65.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.5e-152 543.5 447 64.2
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.7e-138 496.1 420 61.0
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 3.5e-133 479.9 427 57.4
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.7e-130 470.3 429 56.6
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.7e-128 462.6 398 60.1
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.5e-123 447.2 355 65.1
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-122 444.5 355 64.8
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.3e-116 424.1 497 50.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.5e-115 421.4 238 89.5
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.4e-110 404.8 224 90.6
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.2e-96 358.6 261 73.9
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.9e-75 288.1 228 68.9
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.6e-72 277.7 230 62.6
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.8e-66 257.7 144 87.5
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 9.0e-65 252.7 141 87.2
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 2.2e-63 248.1 160 77.5
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.4e-63 246.5 142 85.9
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 8.4e-63 246.1 168 72.0
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.5e-59 234.6 155 78.1
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 7.4e-59 233.0 137 84.7
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 9.3e-54 216.1 297 44.4
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.4e-51 206.5 129 78.3
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 9.6e-51 206.1 107 97.2
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.0e-47 196.1 309 43.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.3e-39 169.1 95 85.3
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 1.5e-35 155.6 144 59.0
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.3e-34 152.5 131 62.6
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 3.7e-34 151.0 292 34.9
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-32 146.0 118 61.0
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 7.7e-32 143.3 81 84.0
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 5.5e-30 137.1 132 59.1
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.7e-26 124.4 86 73.3
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.7e-18 99.0 72 69.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.8e-18 97.4 58 75.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 5.3e-17 94.0 58 72.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 5.9e-16 90.5 53 83.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.2e-15 88.6 52 82.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 6.5e-15 87.0 125 38.4
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 8.5e-15 86.7 141 41.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 4.2e-14 84.3 52 80.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.3e-12 78.6 44 81.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.3e-12 78.6 166 35.5
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 2.8e-10 71.6 73 49.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.0e-08 65.5 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.5e-06 59.3 54 63.0
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 93.1


User provided reference genes

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