Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.4e-87 326.2 168 100.0
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 5.1e-77 291.2 168 89.3
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 5.6e-76 287.7 168 88.1
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 7.4e-76 287.3 169 87.6
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.2e-59 232.6 172 72.1
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.4e-58 229.2 168 70.8
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 6.9e-58 227.6 171 70.8
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 6.9e-58 227.6 171 70.8
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.9e-55 219.5 168 68.5
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.5e-55 219.2 168 68.5
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 9.4e-55 217.2 162 69.1
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 3.3e-52 208.8 169 62.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.7e-52 208.0 166 64.5
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.7e-52 208.0 166 64.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 9.7e-52 207.2 164 65.2
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.7e-51 206.5 168 61.3
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 4.8e-51 204.9 168 61.3
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 6.3e-51 204.5 169 63.9
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 6.3e-51 204.5 168 61.9
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.1e-50 203.8 167 62.3
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.1e-50 203.8 168 61.9
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.8e-50 203.0 164 63.4
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.4e-49 198.7 168 58.9
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 5.9e-49 198.0 168 59.5
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.0e-48 197.2 168 60.1
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.0e-48 197.2 168 60.1
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.0e-48 197.2 169 62.1
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.2e-48 196.1 168 58.9
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 2.2e-48 196.1 166 62.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 2.2e-48 196.1 168 60.7
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 2.9e-48 195.7 168 59.5
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 6.5e-48 194.5 168 60.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 6.5e-48 194.5 168 59.5
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.1e-47 193.7 164 60.4
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.1e-47 193.7 168 58.9
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.4e-47 193.4 168 58.9
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.4e-47 193.4 168 59.5
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.4e-47 193.4 163 61.3
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 1.9e-47 193.0 166 64.5
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.5e-47 192.6 168 61.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.2e-47 192.2 164 59.8
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 3.2e-47 192.2 167 60.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 5.5e-47 191.4 168 57.7
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 5.5e-47 191.4 168 58.9
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.5e-47 191.4 164 58.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.5e-47 191.4 168 62.5
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 9.4e-47 190.7 169 59.2
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 9.4e-47 190.7 168 58.9
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.2e-46 190.3 164 59.1
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.6e-46 189.9 167 56.3
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 2.1e-46 189.5 167 56.9
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 2.7e-46 189.1 167 61.7
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.7e-46 188.3 166 62.7
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 6.1e-46 188.0 167 56.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 6.1e-46 188.0 169 58.0
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 6.1e-46 188.0 168 59.5
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 7.9e-46 187.6 168 57.1
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.0e-45 187.2 191 51.8
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.0e-45 187.2 168 57.7
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.8e-45 186.4 166 57.8
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.8e-45 186.4 167 57.5
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.8e-45 186.4 164 58.5
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.8e-45 186.4 165 58.2
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.3e-45 186.0 166 58.4
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 2.3e-45 186.0 168 58.3
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.0e-45 185.7 168 56.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 3.0e-45 185.7 168 56.5
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 3.9e-45 185.3 169 58.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 5.1e-45 184.9 167 56.3
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 5.1e-45 184.9 168 56.5
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 5.1e-45 184.9 166 61.4
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 6.7e-45 184.5 168 57.1
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 6.7e-45 184.5 169 57.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 8.8e-45 184.1 168 56.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 8.8e-45 184.1 166 61.4
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 3.3e-44 182.2 166 59.0
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 4.4e-44 181.8 163 56.4
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 4.4e-44 181.8 168 56.0
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 5.7e-44 181.4 166 54.8
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 9.7e-44 180.6 166 56.0
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 9.7e-44 180.6 168 56.0
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 9.7e-44 180.6 164 59.1
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.2e-43 179.5 167 57.5
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.6e-41 173.3 165 55.8
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.6e-41 172.6 163 57.1
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 5.9e-41 171.4 165 57.6
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.1e-39 167.2 169 54.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 4.2e-39 165.2 159 56.0
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.6e-38 163.3 169 55.6
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.0e-37 160.6 143 60.1
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 4.0e-37 158.7 178 50.0
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 2.8e-35 152.5 162 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.4e-34 150.2 162 50.0
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.4e-34 150.2 162 48.1
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.8e-34 149.8 163 49.7
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.5e-31 139.4 172 46.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.2e-31 138.7 168 45.8
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 4.2e-31 138.7 162 45.1
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 5.5e-31 138.3 162 46.9
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 9.4e-31 137.5 141 52.5
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 9.8e-28 127.5 102 58.8
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.4e-26 122.9 167 42.5
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 5.0e-24 115.2 162 41.4
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 6.3e-19 98.2 233 32.2
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.1e-15 87.4 235 28.9
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 1.2e-09 67.4 48 64.6
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.9e-07 60.1 151 28.5
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 9.5e-07 57.8 71 43.7


User provided reference genes

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