Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21208 Trifolium pratense HOM05D003334 ORTHO05D004076 1.7e-70 269.2 135 100.0
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 2.7e-52 208.8 143 76.9
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 1.7e-51 206.1 143 75.5
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 3.0e-51 205.3 143 74.1
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 6.6e-51 204.1 143 73.4
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 3.3e-50 201.8 143 74.1
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 7.3e-50 200.7 143 72.7
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 2.1e-49 199.1 143 72.7
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 4.7e-49 198.0 143 73.4
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 4.7e-49 198.0 143 73.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 1.1e-48 196.8 143 72.0
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 1.4e-48 196.4 143 72.7
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 1.8e-48 196.1 143 71.3
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 1.8e-48 196.1 143 71.3
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 2.3e-48 195.7 143 70.6
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 2.3e-48 195.7 143 72.0
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 3.1e-48 195.3 143 71.3
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 3.1e-48 195.3 143 71.3
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 4.0e-48 194.9 144 70.1
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 5.2e-48 194.5 143 72.0
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 6.8e-48 194.1 143 71.3
QL01p002104 Quercus lobata HOM05D003334 ORTHO05D004076 6.8e-48 194.1 144 71.5
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 6.8e-48 194.1 143 71.3
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.2e-47 193.4 143 70.6
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 1.2e-47 193.4 143 72.7
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 1.2e-47 193.4 142 71.8
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 1.5e-47 193.0 143 71.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.5e-47 193.0 143 71.3
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 2.0e-47 192.6 143 71.3
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 2.0e-47 192.6 143 72.0
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 2.6e-47 192.2 143 70.6
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 4.4e-47 191.4 143 69.9
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 4.4e-47 191.4 141 70.9
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 5.8e-47 191.0 143 72.0
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 5.8e-47 191.0 143 70.6
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 7.5e-47 190.7 143 69.9
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 1.3e-46 189.9 143 69.2
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.3e-46 189.9 143 69.2
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 2.2e-46 189.1 143 69.9
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 2.2e-46 189.1 143 69.9
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 2.2e-46 189.1 143 69.9
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 2.2e-46 189.1 143 69.9
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 2.2e-46 189.1 143 69.9
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 2.9e-46 188.7 143 69.2
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 4.9e-46 188.0 143 69.2
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 4.9e-46 188.0 143 69.9
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 4.9e-46 188.0 155 65.8
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 4.9e-46 188.0 143 68.5
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 6.4e-46 187.6 143 69.2
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 8.3e-46 187.2 143 69.2
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 1.1e-45 186.8 143 70.6
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 1.1e-45 186.8 143 69.2
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 1.1e-45 186.8 143 69.2
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 1.1e-45 186.8 149 66.4
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 1.4e-45 186.4 143 68.5
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.4e-45 186.4 143 69.2
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 1.4e-45 186.4 142 69.7
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 1.9e-45 186.0 143 70.6
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 1.9e-45 186.0 143 69.2
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 2.4e-45 185.7 143 68.5
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 2.4e-45 185.7 143 68.5
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.4e-45 185.7 143 67.8
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.4e-45 185.7 148 66.2
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 2.4e-45 185.7 143 67.1
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.4e-45 185.7 143 67.1
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 3.2e-45 185.3 170 61.2
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 3.2e-45 185.3 143 67.8
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 3.2e-45 185.3 143 69.2
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 4.1e-45 184.9 143 67.8
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 7.1e-45 184.1 143 67.8
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 7.1e-45 184.1 143 67.1
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 7.1e-45 184.1 143 67.1
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 7.1e-45 184.1 143 68.5
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 9.2e-45 183.7 143 68.5
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 9.2e-45 183.7 143 68.5
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 1.2e-44 183.3 143 67.1
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 1.6e-44 183.0 143 67.1
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 1.6e-44 183.0 143 68.5
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 2.1e-44 182.6 143 65.7
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 2.7e-44 182.2 143 67.1
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 2.7e-44 182.2 143 67.8
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 2.7e-44 182.2 143 67.8
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 4.6e-44 181.4 143 67.8
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 4.6e-44 181.4 145 68.3
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 6.0e-44 181.0 162 62.3
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 7.8e-44 180.6 143 67.8
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.0e-43 180.3 143 65.7
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 1.0e-43 180.3 143 65.7
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 1.3e-43 179.9 145 67.6
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 1.3e-43 179.9 143 65.0
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 1.3e-43 179.9 143 64.3
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 1.7e-43 179.5 143 65.7
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 1.7e-43 179.5 143 65.7
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 1.7e-43 179.5 143 65.7
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-43 179.5 145 66.9
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-43 179.5 143 65.7
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.7e-43 179.5 143 65.7
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 3.0e-43 178.7 141 66.7
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 3.0e-43 178.7 142 66.9
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 3.9e-43 178.3 149 63.8
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 3.9e-43 178.3 143 65.0
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 5.1e-43 177.9 143 69.2
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 5.1e-43 177.9 151 64.9
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 5.1e-43 177.9 143 65.7
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 6.6e-43 177.6 143 64.3
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 8.6e-43 177.2 143 67.1
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 1.1e-42 176.8 143 63.6
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 1.5e-42 176.4 150 64.0
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.5e-42 176.4 143 66.4
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.5e-42 176.4 143 65.0
Oeu063204.2 Olea europaea HOM05D003334 ORTHO05D004076 1.9e-42 176.0 138 67.4
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 2.5e-42 175.6 141 66.0
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 5.6e-42 174.5 124 73.4
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 5.6e-42 174.5 143 64.3
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 1.6e-41 172.9 143 63.6
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 1.6e-41 172.9 143 64.3
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 2.1e-41 172.6 143 65.7
Sc06g0005190 Simmondsia chinensis HOM05D003334 ORTHO05D004076 2.1e-41 172.6 136 68.4
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 8.1e-41 170.6 142 64.1
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 8.1e-41 170.6 143 62.9
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 4.0e-40 168.3 145 64.1
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 5.2e-40 167.9 132 65.2
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 8.9e-40 167.2 148 61.5
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 8.9e-40 167.2 143 62.9
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 1.2e-39 166.8 134 64.9
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 3.4e-39 165.2 170 55.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.8e-39 164.5 146 61.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 5.8e-39 164.5 146 61.6
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 1.3e-38 163.3 131 64.9
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-38 162.9 142 62.0
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.2e-38 162.5 119 71.4
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 2.9e-38 162.2 144 61.8
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 6.4e-38 161.0 142 60.6
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 6.4e-38 161.0 142 60.6
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 1.4e-37 159.8 150 59.3
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 1.4e-37 159.8 150 59.3
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 3.2e-37 158.7 193 48.2
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 9.2e-37 157.1 149 55.7
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 1.2e-36 156.8 142 58.5
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.3e-35 153.3 143 58.0
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 4.3e-34 148.3 143 55.2
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 1.4e-29 133.3 143 50.3
AagrBONN_evm.TU.Sc2ySwM_228.5148 Anthoceros agrestis HOM05D003334 ORTHO05D004076 5.4e-29 131.3 139 54.0
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 1.2e-28 130.2 124 59.7
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 2.3e-27 125.9 199 42.7
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.3e-27 125.9 108 62.0
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 1.1e-26 123.6 113 59.3
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.1e-25 119.4 165 46.7
QL12p030357 Quercus lobata HOM05D003334 ORTHO05D004076 2.1e-25 119.4 71 84.5
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 6.2e-25 117.9 149 43.6
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 1.4e-24 116.7 59 93.2
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 3.1e-24 115.5 58 93.1
Sabra04G0133700 Salix brachista HOM05D003334 ORTHO05D004076 2.9e-22 109.0 120 53.3
BolC3t16384H Brassica oleracea HOM05D003334 ORTHO05D004076 3.8e-22 108.6 96 61.5
C03p40970 Brassica napus HOM05D003334 ORTHO05D004076 8.4e-22 107.5 96 60.4
ECA233G4312 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.4e-21 106.7 107 56.1
BolC3t16371H Brassica oleracea HOM05D003334 ORTHO05D004076 2.4e-21 105.9 96 60.4
BolC3t16373H Brassica oleracea HOM05D003334 ORTHO05D004076 4.2e-21 105.1 96 60.4
SEGI_09752 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 1.3e-17 93.6 61 75.4
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.1e-17 92.8 89 58.4
Cc02_g30090 Coffea canephora HOM05D003334 ORTHO05D004076 5.8e-15 84.7 63 61.9
Nitab4.5_0000288g0150 Nicotiana tabacum HOM05D003334 ORTHO05D004076 5.8e-15 84.7 62 66.1
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 2.4e-13 79.3 61 59.0
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 9.6e-10 67.4 74 52.7
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 4.8e-09 65.1 31 93.5
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 4.8e-09 65.1 31 93.5
SMO115G0240 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 8.2e-09 64.3 140 30.0
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 4.5e-07 58.5 31 87.1
Nitab4.5_0006136g0030 Nicotiana tabacum HOM05D000111 ORTHO05D001334 5.8e-07 58.2 37 75.7
Oeu028094.1 Olea europaea HOM05D003334 ORTHO05D290476 8.4e-06 54.3 46 60.9


User provided reference genes

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