Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 9.2e-151 537.3 377 100.0
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.0e-133 480.7 377 90.2
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.2e-121 440.7 377 86.7
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 4.9e-120 435.3 377 88.1
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.1e-114 416.0 377 86.2
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.1e-109 398.7 379 81.8
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 5.1e-109 398.7 377 83.0
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 3.3e-108 396.0 378 79.6
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.3e-107 394.0 379 79.9
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 8.1e-107 391.3 377 83.0
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 2.4e-106 389.8 379 79.9
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.1e-106 389.4 377 78.8
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.3e-106 388.7 378 80.4
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.5e-105 387.1 379 79.7
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 6.4e-104 381.7 379 79.2
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 8.4e-104 381.3 379 67.8
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.4e-103 380.6 379 69.9
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 3.2e-103 379.4 386 78.8
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.2e-103 379.4 379 82.1
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 4.2e-103 379.0 385 82.3
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.6e-102 377.1 379 65.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.0e-102 375.2 379 81.0
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.0e-101 374.4 379 81.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.3e-101 374.0 379 75.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.0e-101 372.9 377 76.9
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 3.9e-101 372.5 377 76.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.9e-101 372.5 379 80.7
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.5e-100 369.8 378 80.2
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.5e-100 369.8 379 78.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.5e-100 369.8 398 73.9
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.3e-100 369.4 406 64.5
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 6.2e-99 365.2 378 78.6
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 6.9e-98 361.7 378 67.7
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.6e-97 358.2 379 77.8
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 2.2e-96 356.7 379 76.3
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.5e-95 353.2 377 77.7
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.2e-95 352.8 382 76.7
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 9.3e-95 351.3 368 78.8
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.6e-94 349.0 382 74.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.6e-94 349.0 382 74.3
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 4.6e-94 349.0 379 76.8
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.0e-93 347.8 378 77.0
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.3e-93 347.4 378 77.0
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.1e-92 344.4 379 76.3
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.5e-92 344.0 378 66.4
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.4e-90 336.7 385 73.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 9.0e-90 334.7 378 74.9
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.2e-89 334.3 379 76.5
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 5.9e-89 332.0 377 74.8
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 2.2e-88 330.1 379 76.0
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 6.5e-88 328.6 375 71.2
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.1e-87 327.8 364 75.3
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.5e-87 326.6 387 70.8
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 9.3e-87 324.7 379 73.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 9.3e-87 324.7 383 73.9
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.6e-86 323.9 378 73.0
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.6e-86 322.8 378 71.4
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 6.1e-86 322.0 380 70.5
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 7.9e-86 321.6 346 72.3
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.0e-85 319.7 352 82.7
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 5.1e-85 318.9 380 69.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 6.7e-85 318.5 388 70.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.5e-84 316.6 379 74.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 2.2e-83 313.5 352 81.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 6.3e-83 312.0 359 71.3
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.4e-82 310.1 371 69.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.1e-82 309.7 346 74.0
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.1e-82 309.7 379 72.3
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 7.7e-81 305.1 382 67.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.1e-76 291.2 359 72.7
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.4e-76 289.3 498 41.2
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 7.4e-76 288.5 371 70.4
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.7e-75 286.2 392 69.6
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 2.4e-74 283.5 372 67.5
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.4e-73 279.6 336 67.3
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.4e-73 279.6 391 68.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 4.5e-73 279.3 391 65.7
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.0e-72 278.1 391 65.5
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 2.2e-72 276.9 391 65.5
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 2.2e-72 276.9 391 65.5
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 8.5e-72 275.0 384 70.1
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.9e-71 273.9 383 69.5
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.2e-71 273.1 384 69.0
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 5.5e-71 272.3 372 66.1
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.2e-70 271.2 380 66.8
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.7e-70 270.0 390 63.6
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 5.2e-69 265.8 349 68.2
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.0e-68 263.8 387 68.5
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.0e-68 263.8 380 66.3
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 5.7e-68 262.3 387 64.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 7.4e-68 261.9 386 64.8
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 9.7e-68 261.5 374 65.5
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.4e-66 257.7 386 45.1
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.8e-66 257.3 366 65.8
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.1e-66 256.1 386 64.5
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.2e-65 254.6 339 70.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 5.9e-65 252.3 389 62.5
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.5e-63 246.9 398 53.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.5e-63 245.7 282 75.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 8.0e-62 241.9 403 51.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.8e-61 240.7 389 60.9
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 3.3e-60 236.5 389 64.3
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.0e-57 227.3 324 68.2
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.9e-57 225.7 324 71.0
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.1e-54 217.2 331 67.7
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 4.7e-54 216.1 387 59.2
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.4e-53 214.5 270 73.3
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 4.0e-53 213.0 331 69.2
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 8.8e-53 211.8 362 62.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 4.4e-52 209.5 186 64.0
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.7e-51 206.5 185 65.9
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.7e-48 197.6 370 59.2
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 8.5e-48 195.3 314 63.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.5e-47 194.5 358 58.1
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.6e-46 191.0 160 65.6
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 4.4e-44 183.0 309 61.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 6.3e-43 179.1 132 84.1
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.4e-42 176.0 381 53.0
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.5e-39 167.9 188 53.2
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.5e-39 165.2 132 75.0
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-38 164.5 132 74.2
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.3e-37 160.6 303 60.1
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 3.4e-36 156.8 299 59.5
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 3.4e-36 156.8 373 52.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 4.4e-28 129.8 357 51.3
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.7e-27 127.9 132 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.7e-24 117.9 245 62.4
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.0e-24 116.3 251 59.8
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 8.6e-24 115.5 115 62.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.2e-22 111.7 167 43.1
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 2.4e-18 97.4 228 55.7
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.2e-18 97.1 94 57.4
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 7.1e-18 95.9 409 46.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.6e-14 83.6 56 94.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 4.7e-14 83.2 57 93.0
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-13 81.3 56 92.9
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-09 68.6 84 66.7


User provided reference genes

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