Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 1.3e-274 949.1 491 100.0
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 2.1e-224 782.3 491 83.9
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 3.6e-216 755.0 492 81.1
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 1.3e-192 676.8 485 73.8
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 2.2e-192 676.0 484 74.4
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 6.5e-165 584.7 491 64.8
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 5.9e-158 561.6 487 63.2
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 2.0e-153 546.6 491 62.3
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 5.0e-149 531.9 489 60.9
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 2.1e-139 500.0 517 55.9
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 2.0e-129 466.8 491 54.2
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 1.7e-128 463.8 475 53.9
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 2.9e-128 463.0 490 52.2
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 5.6e-124 448.7 492 52.0
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 2.8e-123 446.4 467 53.3
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 3.7e-120 436.0 480 51.7
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 6.4e-120 435.3 496 52.0
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 3.2e-119 433.0 487 51.3
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 1.9e-116 423.7 356 64.6
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 6.8e-114 415.2 505 49.9
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 8.4e-112 408.3 491 50.5
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.1e-111 407.9 475 50.7
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 2.1e-110 403.7 485 49.5
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 5.1e-109 399.1 504 48.4
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 5.6e-108 395.6 467 50.5
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 1.5e-105 387.5 482 48.8
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 4.4e-105 386.0 480 47.5
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 3.8e-104 382.9 460 46.5
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 2.4e-103 380.2 488 45.3
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 1.0e-101 374.8 472 49.2
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 4.3e-100 369.4 491 44.6
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 2.1e-99 367.1 477 45.7
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 6.2e-99 365.5 483 44.7
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 6.2e-99 365.5 492 47.0
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 8.1e-99 365.2 238 79.8
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 1.4e-98 364.4 483 45.1
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 9.0e-98 361.7 477 44.0
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 2.6e-97 360.1 484 43.8
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 1.7e-96 357.5 478 44.1
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 2.2e-96 357.1 482 44.8
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 2.2e-96 357.1 348 56.3
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 8.4e-96 355.1 482 44.6
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 1.4e-95 354.4 502 44.2
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 2.4e-95 353.6 500 44.4
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 1.2e-94 351.3 496 44.2
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 1.6e-94 350.9 483 44.5
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 4.6e-94 349.4 335 56.1
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 6.0e-94 349.0 501 42.5
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.0e-93 348.2 476 44.5
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.0e-93 348.2 492 44.1
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.0e-93 348.2 479 46.1
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 1.3e-93 347.8 481 43.0
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 1.1e-92 344.7 391 50.4
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.5e-92 343.6 337 55.2
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 3.3e-92 343.2 494 43.5
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 1.3e-91 341.3 478 43.7
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 1.6e-91 340.9 506 44.1
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 2.4e-90 337.0 490 42.7
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 1.2e-89 334.7 369 50.9
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 5.8e-89 332.4 369 49.3
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 6.5e-88 328.9 485 43.1
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 8.4e-88 328.6 483 44.1
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 2.5e-87 327.0 509 41.5
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 3.5e-86 323.2 511 41.3
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 1.8e-85 320.9 504 42.5
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 7.4e-84 315.5 455 43.1
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 9.6e-84 315.1 340 54.1
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 2.6e-81 307.0 500 43.2
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 3.4e-81 306.6 562 37.2
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 4.2e-79 299.7 219 68.5
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 4.2e-79 299.7 493 41.0
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 3.5e-78 296.6 472 40.0
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 4.2e-71 273.1 437 38.9
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 6.7e-69 265.8 374 42.8
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.5e-68 264.6 342 43.9
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.3e-64 251.5 473 37.6
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 3.8e-64 250.0 402 40.8
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 5.1e-61 239.6 494 36.0
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.4e-50 204.9 240 47.9
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 8.5e-48 195.7 411 34.8
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 3.2e-47 193.7 262 43.9
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 2.3e-45 187.6 470 34.0
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 8.3e-43 179.1 184 52.2
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 3.8e-40 170.2 118 74.6
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 9.4e-39 165.6 263 39.5
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.1e-31 142.1 214 41.1
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 9.5e-31 139.0 182 42.3
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 6.8e-29 132.9 351 32.2
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 9.8e-28 129.0 142 50.0
Cpa.g.sc69.59 Carica papaya HOM05D006564 ORTHO05D007772 1.8e-26 124.8 139 55.4
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 1.8e-26 124.8 135 50.4
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.2e-25 122.1 126 54.8
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 1.6e-25 121.7 197 39.1
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 2.7e-25 120.9 119 51.3
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.7e-24 118.2 108 57.4
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 3.9e-24 117.1 448 27.0
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 1.1e-23 115.5 73 75.3
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 1.8e-21 108.2 132 42.4
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 5.2e-21 106.7 117 50.4
Hund06002 Selenicereus undatus HOM05D006564 ORTHO05D007772 2.6e-20 104.4 143 50.3
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 1.3e-16 92.0 131 39.7
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.5e-15 88.6 89 52.8
SHI17545 Sapria himalayana HOM05D006564 ORTHO05D007772 9.5e-15 85.9 123 42.3
Mapoly0088s0064 Marchantia polymorpha HOM05D006564 ORTHO05D007772 4.0e-13 80.5 351 22.8
SEGI_21655 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 1.2e-12 79.0 206 31.6
Os06g0708200 Oryza sativa ssp. japonica HOM05D006564 ORTHO05D007772 2.6e-12 77.8 89 50.6
HanXRQChr12g0383591 Helianthus annuus HOM05D006564 ORTHO05D007772 5.8e-12 76.6 86 51.2
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 9.8e-12 75.9 299 23.4
Pp3c7_26620 Physcomitrium patens HOM05D006564 ORTHO05D007772 9.8e-12 75.9 481 21.8
SHI17558 Sapria himalayana HOM05D006564 ORTHO05D007772 2.9e-11 74.3 69 52.2
arahy.Tifrunner.gnm1.ann1.EX7DRT Arachis hypogaea HOM05D006564 ORTHO05D007772 5.4e-10 70.1 49 65.3
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 7.1e-10 69.7 66 45.5
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 7.1e-10 69.7 135 31.1
Migut.E00618 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.6e-09 68.6 64 54.7
Gohir.1Z049603 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.6e-08 63.2 61 57.4


User provided reference genes

Program Settings