Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 9.2e-145 516.9 270 100.0
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.4e-137 492.3 271 95.2
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 8.9e-132 473.8 271 91.1
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.9e-126 456.1 271 87.5
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 4.4e-123 444.9 274 86.1
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 9.9e-123 443.7 274 83.6
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.2e-121 438.7 271 85.2
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 6.0e-120 434.5 273 85.3
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.5e-118 429.1 273 84.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 3.4e-115 418.7 272 83.8
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 3.0e-111 405.6 274 80.7
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 5.1e-111 404.8 275 79.3
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 3.3e-110 402.1 275 78.9
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 2.1e-109 399.4 277 79.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.8e-109 399.1 274 78.5
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 8.1e-109 397.5 275 78.9
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.4e-108 396.7 278 79.1
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 77.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.0e-108 395.2 278 78.1
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.3e-108 394.8 274 77.7
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.2e-107 393.7 276 77.5
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.2e-107 393.7 277 77.6
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.6e-107 392.5 277 77.6
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 3.4e-107 392.1 276 76.8
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.4e-107 392.1 279 77.1
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 4.5e-107 391.7 276 77.5
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.6e-107 391.0 282 76.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-106 390.2 277 77.3
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-106 390.2 277 77.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.3e-106 390.2 277 77.3
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.3e-106 390.2 274 77.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.9e-106 389.0 277 76.9
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.9e-106 389.0 276 77.2
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.4e-106 387.9 276 77.2
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.4e-105 386.0 277 76.5
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.4e-105 386.0 277 76.5
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 4.2e-105 385.2 270 76.7
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 5.4e-105 384.8 275 77.8
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 9.3e-105 384.0 276 76.4
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.2e-104 383.6 273 75.1
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.2e-104 383.6 279 74.9
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.6e-104 381.7 275 76.7
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.0e-104 381.3 268 76.9
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.3e-103 380.2 275 74.9
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.3e-103 380.2 273 75.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.9e-103 378.6 273 75.8
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 8.7e-103 377.5 275 73.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-102 377.1 276 74.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.1e-102 377.1 276 75.7
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.6e-102 374.0 273 75.8
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 2.1e-101 372.9 276 74.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 2.1e-101 372.9 276 74.3
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.8e-101 372.5 273 76.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.8e-101 372.5 273 76.6
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.7e-101 372.1 273 74.4
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.8e-101 371.7 275 76.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 8.1e-101 370.9 274 73.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.1e-101 370.9 278 73.7
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.8e-100 369.8 270 74.1
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.3e-100 368.2 272 74.3
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.3e-100 368.2 274 74.8
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.5e-99 366.7 277 74.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.3e-98 363.6 282 72.0
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.9e-98 362.5 276 72.5
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.9e-97 359.8 274 73.7
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 3.2e-97 359.0 274 73.4
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 5.5e-97 358.2 275 73.1
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 5.5e-97 358.2 274 74.8
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 9.3e-97 357.5 278 71.9
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 2.1e-96 356.3 232 80.2
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.1e-96 356.3 276 74.3
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 3.5e-96 355.5 269 73.6
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 7.9e-96 354.4 278 72.3
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 7.9e-96 354.4 284 71.1
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 7.9e-96 354.4 284 70.4
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.0e-95 354.0 284 70.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.8e-95 353.2 277 71.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.8e-95 353.2 274 74.1
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.0e-95 352.4 273 71.1
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.9e-95 352.1 274 71.9
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.9e-95 352.1 276 73.6
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-95 351.7 275 72.4
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-95 351.7 275 72.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 5.1e-95 351.7 275 72.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 5.1e-95 351.7 275 72.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 5.1e-95 351.7 275 72.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 5.1e-95 351.7 271 71.2
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 5.1e-95 351.7 271 71.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.1e-94 350.5 273 71.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.5e-94 350.1 272 72.4
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.5e-94 350.1 272 71.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 2.5e-94 349.4 275 72.0
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 2.5e-94 349.4 246 78.5
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.5e-94 349.4 277 70.8
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 3.3e-94 349.0 275 72.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 3.3e-94 349.0 275 72.7
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 3.3e-94 349.0 275 72.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 3.3e-94 349.0 275 72.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.3e-94 348.6 272 71.0
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.3e-94 348.6 273 72.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 4.3e-94 348.6 272 72.8
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 5.7e-94 348.2 272 71.3
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 7.4e-94 347.8 276 69.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 9.6e-94 347.4 278 71.9
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 9.6e-94 347.4 274 70.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.3e-93 347.1 276 72.5
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.1e-93 346.3 282 69.9
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 8.2e-93 344.4 277 70.0
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 3.1e-92 342.4 194 90.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.2e-91 340.5 199 85.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.6e-91 339.3 268 70.5
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.4e-91 339.0 236 77.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.6e-91 337.8 242 75.2
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.3e-90 337.0 291 67.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.2e-89 332.0 282 66.7
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.2e-88 330.5 271 67.9
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 2.5e-86 322.8 230 74.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.3e-85 320.5 194 83.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.8e-85 319.3 281 65.1
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.8e-85 319.3 278 65.5
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.4e-84 317.0 195 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 9.4e-81 304.3 229 68.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.4e-75 285.8 240 68.3
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.1e-72 275.0 183 77.6
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 3.0e-71 272.7 193 76.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 2.8e-61 239.6 195 72.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.6e-59 233.8 163 76.7
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-58 230.7 134 88.1
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 8.5e-58 228.0 162 71.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.5e-57 226.5 163 68.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 5.5e-57 225.3 270 52.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.0e-48 194.9 231 56.7
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.3e-39 166.8 155 66.5
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.3e-37 158.3 135 62.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 215 46.0
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 215 46.0
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.7e-34 150.6 96 79.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.2e-22 111.3 113 59.3
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.3e-21 105.1 79 72.2
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.8e-11 72.0 176 31.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.7e-10 70.9 190 31.6
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.3e-09 65.5 38 81.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.6e-08 64.3 81 50.6
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 3.1e-07 60.1 97 41.2
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 4.0e-07 59.7 97 41.2
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.0e-06 57.4 60 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2075 Anthoceros agrestis HOM05D041339 ORTHO05D031170 7.6e-06 55.5 97 38.1


User provided reference genes

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