Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20104 Trifolium pratense HOM05D002054 ORTHO05D004936 0.0e+00 1942.5 1029 100.0
Medtr1g010290 Medicago truncatula HOM05D002054 ORTHO05D004936 0.0e+00 1562.7 1030 80.9
Psat6g031120 Pisum sativum HOM05D002054 ORTHO05D004936 0.0e+00 1529.2 1030 81.5
Ca_12906_v3 Cicer arietinum L. HOM05D002054 ORTHO05D004936 0.0e+00 1475.3 1031 78.7
Lj5g0002104 Lotus japonicus HOM05D002054 ORTHO05D004936 0.0e+00 1205.3 1036 68.2
Glyma.17G204300 Glycine max HOM05D002054 ORTHO05D004936 1.4e-311 1072.8 1035 61.9
Glyma.14G129700 Glycine max HOM05D002054 ORTHO05D004936 7.8e-309 1063.9 1037 61.6
Glyma.17G204700 Glycine max HOM05D002054 ORTHO05D004936 2.1e-306 1055.8 1034 60.9
Glyma.14G129600 Glycine max HOM05D002054 ORTHO05D004936 4.5e-304 1048.1 1043 60.2
Phvul.001G055900 Phaseolus vulgaris HOM05D002054 ORTHO05D004936 7.1e-294 1014.2 1036 58.9
VMungo0647G1247 Vigna mungo HOM05D002054 ORTHO05D004936 5.6e-291 1004.6 1037 59.2
arahy.Tifrunner.gnm1.ann1.LJCF3U Arachis hypogaea HOM05D002054 ORTHO05D004936 1.8e-276 956.4 1051 57.3
arahy.Tifrunner.gnm1.ann1.WIN44D Arachis hypogaea HOM05D002054 ORTHO05D004936 2.0e-275 953.0 1051 57.2
VMungo1309G1581 Vigna mungo HOM05D002054 ORTHO05D004936 8.2e-258 894.4 1088 50.8
Lalb_Chr22g0361331 Lupinus albus HOM05D002054 ORTHO05D004936 2.7e-253 879.4 986 55.5
Phvul.009G098700 Phaseolus vulgaris HOM05D002054 ORTHO05D004936 4.7e-253 878.6 1088 50.0
Lalb_Chr08g0243761 Lupinus albus HOM05D002054 ORTHO05D004936 3.4e-235 819.3 1028 50.2
QL12p031184 Quercus lobata HOM05D002054 ORTHO05D004936 1.6e-200 704.1 1076 48.4
Cfa013215 Carpinus fangiana HOM05D002054 ORTHO05D004936 4.9e-194 682.6 1048 44.6
CiPaw.07G217100 Carya illinoinensis HOM05D002054 ORTHO05D004936 9.0e-188 661.8 1043 44.1
MD08G1135600 Malus domestica HOM05D002054 ORTHO05D004936 1.2e-187 661.4 1051 44.2
Manes.16G068600 Manihot esculenta HOM05D002054 ORTHO05D004936 1.1e-185 654.8 1081 43.6
Thecc.09G143700 Theobroma cacao HOM05D002054 ORTHO05D004936 9.3e-185 651.7 1064 46.6
CANSAT25G1939 Cannabis sativa HOM05D002054 ORTHO05D004936 1.0e-183 648.3 1053 44.3
Prupe.1G466100 Prunus persica HOM05D002054 ORTHO05D004936 3.0e-183 646.7 1142 41.9
MD15G1114600 Malus domestica HOM05D002054 ORTHO05D004936 2.6e-179 633.6 1056 44.4
RcHm_v2.0_Chr6g0312671 Rosa chinensis HOM05D002054 ORTHO05D004936 3.4e-179 633.3 1049 43.1
CiPaw.08G016200 Carya illinoinensis HOM05D002054 ORTHO05D004936 4.2e-177 626.3 1053 44.3
Duzib150G0930 Durio zibethinus HOM05D002054 ORTHO05D004936 1.6e-176 624.4 1070 43.7
Dinv35877 Davidia involucrata HOM05D002054 ORTHO05D004936 7.4e-174 615.5 1099 42.5
Duzib168G1204 Durio zibethinus HOM05D002054 ORTHO05D004936 5.0e-170 602.8 1063 43.6
GSVIVG01035731001 Vitis vinifera HOM05D002054 ORTHO05D004936 7.1e-169 599.0 1055 43.0
COL.COLO4_24072 Corchorus olitorius HOM05D002054 ORTHO05D004936 9.3e-169 598.6 1074 42.5
TWI34G0955 Tripterygium wilfordii HOM05D002054 ORTHO05D004936 7.9e-168 595.5 1072 40.1
Potri.018G034900 Populus trichocarpa HOM05D002054 ORTHO05D004936 1.1e-166 591.7 1117 40.6
Gorai.001G045600 Gossypium raimondii HOM05D002054 ORTHO05D004936 4.1e-164 583.2 1060 44.1
Gohir.D07G042600 Gossypium hirsutum HOM05D002054 ORTHO05D004936 1.2e-163 581.6 1060 44.0
FAN15G1142 Fragaria x ananassa HOM05D002054 ORTHO05D004936 2.6e-163 580.5 1052 41.8
TWI63G0485 Tripterygium wilfordii HOM05D002054 ORTHO05D004936 3.4e-163 580.1 1078 39.3
Gohir.D13G209000 Gossypium hirsutum HOM05D002054 ORTHO05D004936 1.7e-162 577.8 1061 40.5
Gorai.013G238100 Gossypium raimondii HOM05D002054 ORTHO05D004936 2.9e-162 577.0 1061 40.4
FAN20G1010 Fragaria x ananassa HOM05D002054 ORTHO05D004936 8.5e-162 575.5 1051 42.2
Sabra18G0035700 Salix brachista HOM05D002054 ORTHO05D004936 1.1e-161 575.1 1123 41.0
FvH4_2g30210 Fragaria vesca HOM05D002054 ORTHO05D004936 2.5e-161 573.9 1049 41.9
ClCG05G017240 Citrullus lanatus HOM05D002054 ORTHO05D004936 2.7e-160 570.5 1059 41.4
Cpa.g.sc91.4 Carica papaya HOM05D002054 ORTHO05D004936 5.1e-159 566.2 1166 39.3
CsaV3_3G046720 Cucumis sativus L. HOM05D002054 ORTHO05D004936 2.2e-157 560.8 1070 40.7
FAN24G2685 Fragaria x ananassa HOM05D002054 ORTHO05D004936 5.3e-156 556.2 1081 40.7
Potri.006G246200 Populus trichocarpa HOM05D002054 ORTHO05D004936 5.9e-155 552.7 1013 40.4
Atru.chr7.2318 Acer truncatum HOM05D002054 ORTHO05D004936 9.4e-153 545.4 880 44.0
Ciclev10007235m.g Citrus clementina HOM05D002054 ORTHO05D004936 1.3e-149 535.0 1201 36.9
Sabra06G0192700 Salix brachista HOM05D002054 ORTHO05D004936 1.8e-148 531.2 1107 37.4
Sed0018977 Sechium edule HOM05D002054 ORTHO05D004936 2.0e-147 527.7 1056 40.3
Dinv30217 Davidia involucrata HOM05D002054 ORTHO05D004936 4.5e-147 526.6 1095 39.0
TAR383G0292 Trochodendron aralioides HOM05D002054 ORTHO05D004936 1.7e-146 524.6 1097 39.5
CSS0040563 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 2.2e-146 524.2 1013 39.0
Duzib187G1611 Durio zibethinus HOM05D002054 ORTHO05D004936 3.8e-146 523.5 1049 40.6
CSS0008422 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 5.0e-146 523.1 932 41.8
Sed0026318 Sechium edule HOM05D002054 ORTHO05D004936 5.5e-145 519.6 1065 38.6
FAN27G0259 Fragaria x ananassa HOM05D002054 ORTHO05D004936 1.1e-142 511.9 1083 38.4
Gohir.A13G203700 Gossypium hirsutum HOM05D002054 ORTHO05D004936 4.8e-141 506.5 1053 38.7
Nn8g39260 Nelumbo nucifera HOM05D002054 ORTHO05D004936 6.5e-138 496.1 988 39.3
CSS0015303 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 7.2e-137 492.7 905 41.1
Gohir.A07G038500 Gossypium hirsutum HOM05D002054 ORTHO05D004936 9.4e-137 492.3 794 44.8
Nn2g11817 Nelumbo nucifera HOM05D002054 ORTHO05D004936 4.7e-136 490.0 1102 38.1
Nitab4.5_0000125g0100 Nicotiana tabacum HOM05D002054 ORTHO05D004936 2.3e-135 487.6 1089 39.2
Nitab4.5_0005258g0030 Nicotiana tabacum HOM05D002054 ORTHO05D004936 7.5e-134 482.6 1100 39.7
PGSC0003DMG400014482 Solanum tuberosum HOM05D002054 ORTHO05D004936 9.8e-126 455.7 936 40.6
Solyc08g067920.3 Solanum lycopersicum HOM05D002054 ORTHO05D004936 1.7e-125 454.9 917 39.8
MBI01_g03365_MAGBIO Magnolia biondii HOM05D002054 ORTHO05D004936 4.9e-125 453.4 1084 35.4
Rhsim07G0154400 Rhododendron simsii HOM05D002054 ORTHO05D004936 1.1e-124 452.2 965 37.8
Sopen08g021830 Solanum pennellii HOM05D002054 ORTHO05D004936 3.1e-124 450.7 926 39.6
Peaxi162Scf00105g01221 Petunia axillaris HOM05D002054 ORTHO05D004936 1.0e-122 445.7 836 42.0
Lj8A609T43 Lonicera japonica HOM05D002054 ORTHO05D004936 1.7e-122 444.9 718 43.5
CAN.G679.11 Capsicum annuum HOM05D002054 ORTHO05D004936 3.8e-122 443.7 1041 37.9
Oeu027165.1 Olea europaea HOM05D002054 ORTHO05D004936 8.0e-120 436.0 950 38.2
Cc08_g08260 Coffea canephora HOM05D002054 ORTHO05D004936 1.4e-119 435.3 1088 36.1
Lalb_Chr23g0269001 Lupinus albus HOM05D002054 ORTHO05D004936 5.7e-118 429.9 497 53.3
Hund25656 Selenicereus undatus HOM05D002054 ORTHO05D004936 1.3e-117 428.7 975 36.4
AUR62024831 Chenopodium quinoa HOM05D002054 ORTHO05D004936 1.7e-117 428.3 919 37.1
Oeu045173.1 Olea europaea HOM05D002054 ORTHO05D004936 2.2e-117 427.9 1003 36.3
AUR62032386 Chenopodium quinoa HOM05D002054 ORTHO05D004936 9.2e-116 422.5 989 36.6
Haze_21628 Corylus avellana HOM05D002054 ORTHO05D004936 4.6e-115 420.2 615 49.6
Lalb_Chr23g0268991 Lupinus albus HOM05D002054 ORTHO05D004936 2.3e-114 417.9 398 57.0
Migut.A00268 Erythranthe guttata HOM05D002054 ORTHO05D004936 3.9e-114 417.2 972 37.1
PGR044G1488 Punica granatum HOM05D002054 ORTHO05D004936 6.6e-114 416.4 862 38.3
AL7G19140 Arabidopsis lyrata HOM05D002054 ORTHO05D004936 1.6e-112 411.8 924 36.8
MELO3C003664.2 Cucumis melo HOM05D002054 ORTHO05D004936 2.1e-112 411.4 1064 34.9
EL10Ac2g02532 Beta vulgaris HOM05D002054 ORTHO05D004936 6.2e-112 409.8 1015 34.9
Thhalv10024206m.g Eutrema salsugineum HOM05D002054 ORTHO05D004936 3.1e-111 407.5 1040 34.9
Aqoxy7G01826 Aquilegia oxysepala HOM05D002054 ORTHO05D004936 8.9e-111 406.0 1071 35.6
AT4G32620 Arabidopsis thaliana HOM05D002054 ORTHO05D004936 3.2e-108 397.5 943 35.6
THA.LOC104819891 Tarenaya hassleriana HOM05D002054 ORTHO05D004936 5.4e-108 396.7 833 37.9
SalBow4G1030 Salvia bowleyana HOM05D002054 ORTHO05D004936 2.0e-107 394.8 1107 34.1
Actinidia15714 Actinidia chinensis HOM05D002054 ORTHO05D004936 7.8e-107 392.9 1092 34.0
Ah.12g063070 Amaranthus hybridus HOM05D002054 ORTHO05D004936 1.3e-106 392.1 938 35.8
Carub.0007s0792 Capsella rubella HOM05D002054 ORTHO05D004936 5.0e-106 390.2 932 35.6
PSO782G2545 Papaver somniferum HOM05D002054 ORTHO05D004936 3.3e-105 387.5 979 35.1
TAR624G1047 Trochodendron aralioides HOM05D002054 ORTHO05D004936 3.6e-104 384.0 1116 34.3
PSO063G3196 Papaver somniferum HOM05D002054 ORTHO05D004936 8.9e-103 379.4 974 34.3
A01p05730 Brassica napus HOM05D002054 ORTHO05D004936 1.1e-100 372.5 914 35.8
BraA01t00543Z Brassica rapa HOM05D002054 ORTHO05D004936 1.4e-100 372.1 914 35.8
MSTRG.14005 Avicennia marina HOM05D002054 ORTHO05D004936 3.2e-100 370.9 940 34.3
MSTRG.25879 Avicennia marina HOM05D002054 ORTHO05D004936 1.6e-99 368.6 1108 32.8
CARHR240590 Cardamine hirsuta HOM05D002054 ORTHO05D004936 1.6e-99 368.6 934 35.3
MSTRG.1650 Avicennia marina HOM05D002054 ORTHO05D004936 4.6e-99 367.1 1124 32.7
Aa31sc102G50 Aethionema arabicum HOM05D002054 ORTHO05D004936 5.1e-98 363.6 936 34.4
BcaC09g52055 Brassica carinata HOM05D002054 ORTHO05D004936 1.1e-97 362.5 916 34.8
C01p06310 Brassica napus HOM05D002054 ORTHO05D004936 1.1e-95 355.9 913 34.7
BolC1t00629H Brassica oleracea HOM05D002054 ORTHO05D004936 4.0e-95 354.0 911 34.5
Lsat_1_v5_gn_5_45480 Lactuca sativa HOM05D002054 ORTHO05D004936 4.1e-92 344.0 1027 32.8
DCAR_003068 Daucus carota HOM05D002054 ORTHO05D004936 7.8e-91 339.7 677 38.7
Sc09g0008880 Simmondsia chinensis HOM05D002054 ORTHO05D004936 3.0e-90 337.8 990 34.7
Sp7g30390 Schrenkiella parvula HOM05D002054 ORTHO05D004936 6.6e-90 336.7 1045 32.0
ECA246G4952 Erigeron canadensis HOM05D002054 ORTHO05D004936 3.3e-89 334.3 872 33.4
SHI18618 Sapria himalayana HOM05D002054 ORTHO05D004936 3.6e-88 330.9 992 33.0
vmacro05451 Vaccinium macrocarpon HOM05D002054 ORTHO05D004936 6.8e-87 326.6 779 36.5
Migut.E01505 Erythranthe guttata HOM05D002054 ORTHO05D004936 7.6e-86 323.2 864 33.3
unitig_747.g21877 Utricularia gibba HOM05D002054 ORTHO05D004936 2.1e-83 315.1 743 34.5
HanXRQChr12g0381921 Helianthus annuus HOM05D002054 ORTHO05D004936 6.0e-83 313.5 668 37.9
DCAR_007679 Daucus carota HOM05D002054 ORTHO05D004936 2.3e-82 311.6 1007 32.3
Oeu019414.3 Olea europaea HOM05D002054 ORTHO05D004936 4.8e-80 303.9 1055 33.1
TAR636G1526 Trochodendron aralioides HOM05D002054 ORTHO05D004936 1.9e-76 292.0 613 39.5
unitig_0.g2812 Utricularia gibba HOM05D002054 ORTHO05D004936 9.6e-73 279.6 940 31.0
SGA_v2.0_scaffold448G51787 Striga asiatica HOM05D002054 ORTHO05D004936 3.5e-67 261.2 945 31.6
Actinidia14642 Actinidia chinensis HOM05D002054 ORTHO05D004936 6.0e-67 260.4 542 38.7
SGA_v2.0_scaffold27G11503 Striga asiatica HOM05D002054 ORTHO05D004936 2.1e-64 251.9 927 29.1
CDE04G1031 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 1.5e-62 245.7 732 33.3
HPP92_009885 Vanilla planifolia HOM05D002054 ORTHO05D004936 5.5e-60 237.3 598 33.9
TAR636G2779 Trochodendron aralioides HOM05D002054 ORTHO05D004936 6.9e-55 220.3 387 39.8
ATR0037G018 Amborella trichopoda HOM05D002054 ORTHO05D004936 1.5e-54 219.2 738 29.3
Actinidia14643 Actinidia chinensis HOM05D002054 ORTHO05D004936 1.0e-53 216.5 423 38.8
Eucgr.C01819 Eucalyptus grandis HOM05D002054 ORTHO05D004936 4.3e-41 174.5 586 30.9
CDE02G2306 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 6.9e-39 167.2 402 38.1
Zm00001eb337050 Zea mays HOM05D002054 ORTHO05D004936 1.7e-32 146.0 617 29.8
Ah.00g238200 Amaranthus hybridus HOM05D002054 ORTHO05D004936 6.7e-26 124.0 345 32.8
Psat1g141280 Pisum sativum HOM05D000049 ORTHO05D000027 2.8e-24 118.6 91 69.2
VMungo1309G3111 Vigna mungo HOM05D002054 ORTHO05D004936 3.1e-23 115.2 174 50.0
SEGI_27449 Sequoiadendron giganteum HOM05D002054 ORTHO05D004936 2.0e-22 112.5 350 31.4
Psat0s1646g0200 Pisum sativum HOM05D013148 ORTHO05D004936 2.2e-21 109.0 76 73.7
Eucgr.C01559 Eucalyptus grandis HOM05D002054 ORTHO05D004936 6.5e-21 107.5 220 36.8
Haze_21629 Corylus avellana HOM05D002054 ORTHO05D004936 1.0e-18 100.1 228 34.6
Eucgr.C01848 Eucalyptus grandis HOM05D002054 ORTHO05D004936 2.0e-17 95.9 218 34.9
Atru.chr7.2319 Acer truncatum HOM05D002054 ORTHO05D004936 1.3e-13 83.2 177 41.8
Psat1g136120 Pisum sativum HOM05D001218 ORTHO05D015696 1.2e-11 76.6 59 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3454 Anthoceros agrestis HOM05D002054 ORTHO05D004936 3.6e-11 75.1 150 34.0
Os01g0179500 Oryza sativa ssp. japonica HOM05D002054 ORTHO05D004936 1.8e-10 72.8 301 25.6
Mapoly0176s0001 Marchantia polymorpha HOM05D002054 ORTHO05D004936 1.2e-09 70.1 327 29.1
SEGI_34625 Sequoiadendron giganteum HOM05D002054 ORTHO05D011745 1.2e-09 70.1 112 36.6
Potri.014G121701 Populus trichocarpa HOM05D001061 ORTHO05D006808 2.8e-08 65.5 61 45.9
Pp3c7_14100 Physcomitrium patens HOM05D002054 ORTHO05D004936 1.1e-07 63.5 137 32.1
CBR_g45468 Chara braunii HOM05D002054 ORTHO05D004936 1.4e-07 63.2 52 51.9
VMungo1383G1517 Vigna mungo HOM05D000590 ORTHO05D005739 2.4e-07 62.4 65 47.7
Phvul.008G018500 Phaseolus vulgaris HOM05D000590 ORTHO05D005739 3.1e-07 62.0 65 46.2
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 5.4e-07 61.2 89 34.8
Migut.H01632 Erythranthe guttata HOM05D000555 ORTHO05D001906 7.0e-07 60.8 49 57.1
Glyma.18G282700 Glycine max HOM05D000590 ORTHO05D005739 7.0e-07 60.8 79 39.2
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 9.2e-07 60.5 65 46.2
Sabra14G0090200 Salix brachista HOM05D001061 ORTHO05D006808 9.2e-07 60.5 61 39.3
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 1.2e-06 60.1 53 50.9
Cfa005809 Carpinus fangiana HOM05D001061 ORTHO05D006808 1.6e-06 59.7 48 47.9
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 1.6e-06 59.7 73 37.0
Glyma.08G258500 Glycine max HOM05D000590 ORTHO05D005739 2.0e-06 59.3 79 38.0
Lsat_1_v5_gn_5_63200 Lactuca sativa HOM05D000590 ORTHO05D005739 2.0e-06 59.3 52 46.2
Os09g0407600 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006808 2.0e-06 59.3 83 37.3
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 2.7e-06 58.9 221 26.2
SMO164G0124 Selaginella moellendorffii HOM05D002054 ORTHO05D004936 2.7e-06 58.9 234 27.4
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 3.5e-06 58.5 54 48.1
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 3.5e-06 58.5 54 48.1
COL.COLO4_23240 Corchorus olitorius HOM05D001061 ORTHO05D006808 3.5e-06 58.5 50 48.0
SEGI_27779 Sequoiadendron giganteum HOM05D002054 ORTHO05D005362 3.5e-06 58.5 185 27.6
CAN.G1490.5 Capsicum annuum HOM05D000555 ORTHO05D000646 4.5e-06 58.2 117 33.3
Eucgr.J03105 Eucalyptus grandis HOM05D000555 ORTHO05D000646 4.5e-06 58.2 86 37.2
Lalb_Chr04g0258071 Lupinus albus HOM05D000590 ORTHO05D005739 4.5e-06 58.2 65 44.6
Nn2g12328 Nelumbo nucifera HOM05D000555 ORTHO05D000646 4.5e-06 58.2 115 34.8
Nitab4.5_0008811g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006808 4.5e-06 58.2 59 47.5
SGA_v2.0_scaffold49G18219 Striga asiatica HOM05D000555 ORTHO05D001906 4.5e-06 58.2 89 39.3
MD03G1296000 Malus domestica HOM05D001061 ORTHO05D006808 5.9e-06 57.8 76 38.2
arahy.Tifrunner.gnm1.ann1.QZG3GX Arachis hypogaea HOM05D000555 ORTHO05D000646 7.7e-06 57.4 76 40.8
CARHR005360 Cardamine hirsuta HOM05D000590 ORTHO05D005739 7.7e-06 57.4 64 45.3
HanXRQChr02g0043901 Helianthus annuus HOM05D000555 ORTHO05D000646 7.7e-06 57.4 57 49.1


User provided reference genes

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