Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.9e-141 505.8 244 100.0
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 2.1e-132 475.7 244 92.6
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 8.1e-132 473.8 244 92.2
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 3.1e-131 471.9 244 92.2
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 2.8e-124 448.7 244 86.9
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 87.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 5.2e-123 444.5 244 86.5
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 8.4e-121 437.2 245 84.9
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 6.0e-119 431.0 245 84.5
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.0e-118 430.3 244 84.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.5e-111 405.2 244 78.7
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.3e-110 403.3 244 79.1
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.7e-110 402.9 244 79.5
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.1e-109 400.2 244 76.6
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 77.9
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 78.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 78.3
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 77.5
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 9.6e-109 397.1 246 76.4
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 2.1e-108 396.0 244 79.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.6e-108 395.2 244 75.8
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 77.5
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 79.5
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.8
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 77.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.0e-107 391.7 244 77.0
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 9.0e-107 390.6 246 76.8
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 73.4
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 77.0
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 3.4e-106 388.7 244 76.2
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 5.8e-106 387.9 244 77.0
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.4
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 76.6
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 9.9e-106 387.1 244 73.8
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 9.9e-106 387.1 244 76.6
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 74.6
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 74.6
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.9e-104 382.9 244 73.0
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 2.4e-104 382.5 246 74.8
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 4.2e-104 381.7 242 75.2
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 5.4e-104 381.3 245 73.5
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 5.4e-104 381.3 260 71.5
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 7.1e-104 380.9 244 73.0
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 9.3e-104 380.6 242 73.1
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.2e-103 380.2 244 73.4
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.2e-103 380.2 245 74.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 1.6e-103 379.8 244 71.7
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 76.2
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 71.7
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 74.6
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 6.0e-103 377.9 245 74.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 71.7
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 7.9e-103 377.5 244 73.0
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.9e-103 377.5 244 72.5
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.0e-102 377.1 244 72.5
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.3e-102 376.7 244 72.5
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 3.9e-102 375.2 244 75.4
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.9e-102 375.2 245 73.1
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 5.1e-102 374.8 244 73.4
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 6.7e-102 374.4 245 71.8
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 8.7e-102 374.0 245 71.4
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.1e-101 373.6 244 71.7
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.1e-101 373.6 245 73.5
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.5e-101 373.2 245 71.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.6e-101 371.3 245 70.6
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 7.4e-101 370.9 244 72.1
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 4.8e-100 368.2 244 72.5
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 8.1e-100 367.5 242 72.7
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.4e-99 366.7 285 64.9
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 4.0e-99 365.2 244 71.7
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 4.0e-99 365.2 242 70.7
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 6.9e-99 364.4 244 72.1
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.2e-98 363.6 230 74.3
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 1.5e-98 363.2 242 70.2
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 2.0e-98 362.8 275 65.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 4.5e-98 361.7 229 75.1
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 5.8e-98 361.3 242 69.8
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.3e-97 360.1 244 69.7
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 1.3e-97 360.1 276 65.6
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 3.8e-97 358.6 231 73.6
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.4e-97 357.8 244 69.7
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 5.5e-96 354.8 296 60.8
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.1e-95 352.8 229 73.4
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 7.9e-95 350.9 254 67.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 3.9e-94 348.6 244 69.3
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.5e-93 346.7 214 76.2
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.3e-93 345.5 244 66.4
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.6e-92 343.2 244 66.4
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.7e-92 342.0 241 68.0
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 6.9e-91 337.8 247 67.2
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 3.4e-90 335.5 328 54.9
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.2e-88 328.9 210 73.3
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 3.3e-85 318.9 205 73.7
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.7e-85 317.4 205 74.1
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.3e-83 311.6 209 71.8
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 9.0e-83 310.8 281 53.7
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 3.8e-81 305.4 250 56.4
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 4.2e-80 302.0 248 56.9
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.1e-79 298.1 301 54.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.8e-78 296.6 244 61.9
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.3e-76 288.1 244 59.4
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 2.0e-74 283.1 214 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 2.0e-69 266.5 314 43.9
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.1e-61 240.7 260 47.7
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.1e-61 240.7 250 50.0
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.7e-55 219.5 238 47.5
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.7e-54 214.9 251 46.2
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.7e-52 210.3 255 41.6
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 5.3e-51 205.3 137 73.0
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 5.3e-51 205.3 340 40.0
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 9.4e-48 194.5 125 76.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 7.7e-42 174.9 110 71.8
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 1.0e-38 164.5 123 63.4
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.2e-35 151.4 97 73.2
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.6e-31 140.6 81 76.5
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.4e-27 126.7 83 75.9
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.4e-27 126.7 83 75.9
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.1e-24 117.9 75 78.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 9.8e-21 104.8 57 80.7
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 7.0e-19 98.6 64 75.0
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.6e-15 87.4 94 47.9
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.6e-13 80.1 51 68.6
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-12 77.8 51 66.7
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-12 77.8 51 66.7
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 6.4e-12 75.5 122 39.3
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 7.8e-10 68.6 73 43.8
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.0e-09 68.2 43 67.4
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.3e-09 67.8 37 78.4
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.2e-07 58.9 65 44.6
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 8.1e-07 58.5 87 37.9
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 8.1e-07 58.5 76 42.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.1e-07 58.5 95 36.8
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 2.4e-06 57.0 38 63.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.4e-06 57.0 77 41.6
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.1e-06 56.6 73 41.1
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 4.0e-06 56.2 75 38.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 5.2e-06 55.8 75 41.3


User provided reference genes

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