Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 3.1e-303 1044.3 499 100.0
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 6.2e-280 966.8 500 92.4
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.3e-272 942.6 499 90.0
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 2.4e-255 885.2 503 84.5
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 4.8e-248 860.9 488 83.0
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 2.4e-247 858.6 504 81.3
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 3.4e-246 854.7 499 83.0
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.8e-245 851.3 482 82.6
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 2.1e-243 845.5 483 82.6
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 8.8e-242 840.1 504 79.0
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.0e-234 815.1 494 78.7
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 9.7e-233 810.1 496 77.4
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.3e-232 809.7 495 78.4
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.4e-231 805.4 496 76.8
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 3.1e-231 805.1 493 77.1
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 1.2e-230 803.1 495 77.4
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 2.0e-230 802.4 496 76.4
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 2.0e-230 802.4 490 77.8
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 5.9e-230 800.8 487 77.8
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 1.0e-229 800.0 503 76.1
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.3e-229 799.7 490 76.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 5.0e-229 797.7 500 75.8
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 1.4e-228 796.2 497 76.1
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 9.4e-228 793.5 503 75.3
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 3.3e-225 785.0 484 76.4
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 7.4e-225 783.9 484 76.7
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 2.2e-224 782.3 478 75.9
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 6.3e-224 780.8 484 76.2
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 6.3e-224 780.8 474 75.3
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 1.1e-223 780.0 486 75.7
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 9.1e-223 776.9 495 74.7
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.2e-222 776.5 484 75.6
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 2.6e-222 775.4 484 75.2
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 6.5e-221 770.8 482 75.9
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 8.5e-221 770.4 475 76.6
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.1e-220 770.0 481 74.4
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.9e-220 769.2 471 77.5
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 4.2e-220 768.1 514 71.8
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 7.2e-220 767.3 490 74.5
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 2.7e-219 765.4 483 74.7
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 3.6e-219 765.0 496 73.6
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 3.6e-219 765.0 484 75.2
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 4.7e-219 764.6 474 75.5
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.3e-218 762.3 484 73.8
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 2.3e-218 762.3 506 71.5
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 3.0e-218 761.9 494 72.1
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 4.0e-218 761.5 483 75.2
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 5.2e-218 761.1 458 78.2
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 2.6e-217 758.8 490 73.3
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 7.5e-217 757.3 483 73.5
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 1.3e-216 756.5 475 74.5
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.3e-216 756.5 486 74.9
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 2.2e-216 755.7 476 75.0
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 2.2e-216 755.7 487 73.9
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 4.8e-216 754.6 477 75.1
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 6.3e-216 754.2 488 73.6
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.1e-215 753.4 487 73.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 1.1e-215 753.4 518 71.8
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 1.8e-215 752.7 487 73.3
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.4e-215 752.3 475 74.3
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 9.1e-215 750.4 511 70.5
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 3.5e-214 748.4 478 73.6
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 5.9e-214 747.7 544 67.5
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 5.0e-213 744.6 491 71.9
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 5.0e-213 744.6 526 69.8
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 4.7e-211 738.0 484 72.9
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 6.1e-211 737.6 491 72.3
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 3.4e-209 731.9 504 69.2
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.8e-207 726.1 523 67.1
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 3.5e-206 721.8 486 72.6
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.0e-205 720.3 472 74.4
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 2.3e-205 719.2 467 71.5
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.2e-203 713.4 480 69.0
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.1e-203 712.6 474 71.7
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 4.4e-201 704.9 523 66.5
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 9.2e-199 697.2 438 75.8
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 7.8e-198 694.1 572 61.0
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 3.3e-196 688.7 477 69.8
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.8e-194 682.9 487 66.5
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 1.5e-193 679.9 512 66.6
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.4e-193 678.7 455 70.5
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 3.5e-190 668.7 478 65.9
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 1.2e-187 660.2 502 64.9
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.0e-185 652.9 490 66.7
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 2.6e-185 652.5 502 64.7
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 8.3e-184 647.5 500 64.4
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 2.3e-181 639.4 492 62.4
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.6e-180 634.8 396 77.5
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.2e-179 633.6 471 62.8
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 1.7e-176 623.2 470 62.6
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.9e-175 619.8 475 60.8
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.9e-172 609.8 390 75.1
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 5.6e-172 608.2 483 64.0
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 1.1e-170 604.0 483 63.6
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 9.3e-167 590.9 394 73.1
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 2.5e-164 582.8 381 74.0
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.1e-162 575.9 390 71.5
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 9.3e-159 564.3 476 58.2
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 9.3e-159 564.3 382 70.9
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 2.4e-151 539.7 472 57.6
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 7.1e-151 538.1 393 66.7
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 9.0e-146 521.2 357 69.5
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 3.4e-145 519.2 322 75.2
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.4e-138 497.3 478 55.2
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 5.9e-129 465.3 345 66.7
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 1.6e-126 457.2 467 50.5
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 2.8e-123 446.4 388 59.3
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.2e-121 441.0 245 81.6
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.5e-121 440.7 288 70.1
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 6.1e-118 428.7 439 49.4
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.0e-116 423.7 357 59.9
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 7.4e-116 421.8 281 69.8
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 8.0e-110 401.7 357 56.3
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 6.5e-96 355.5 187 84.0
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 5.4e-74 282.7 160 83.1
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.1e-63 248.4 468 35.9
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.5e-47 194.9 112 76.8
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 4.0e-45 186.8 94 83.0
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.5e-33 147.1 93 69.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 6.7e-32 142.9 81 81.5
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 4.3e-31 140.2 69 85.5
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 2.1e-30 137.9 131 55.0
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.0e-29 133.7 112 63.4
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 1.5e-28 131.7 254 34.3
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.3e-22 112.1 94 59.6
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.8e-22 110.9 70 72.9
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 3.1e-21 107.5 211 33.2
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.1e-15 89.0 54 81.5
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 2.9e-11 74.3 58 62.1


User provided reference genes

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