Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 1.5e-30 135.6 70 100.0
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 2.2e-26 121.7 70 91.4
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 6.5e-26 120.2 67 92.5
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 6.7e-23 110.2 69 78.3
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 8.8e-23 109.8 67 79.1
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 8.8e-23 109.8 67 82.1
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 1.1e-22 109.4 67 77.6
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 79.1
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 77.6
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.6e-22 108.2 67 79.1
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 3.3e-22 107.8 67 77.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 3.3e-22 107.8 67 74.6
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 3.3e-22 107.8 70 75.7
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 5.7e-22 107.1 67 79.1
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 5.7e-22 107.1 67 79.1
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 5.7e-22 107.1 67 77.6
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 76.1
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 76.1
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 76.1
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 76.1
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 76.1
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 77.6
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 79.1
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 7.4e-22 106.7 70 71.4
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 7.4e-22 106.7 67 77.6
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 9.7e-22 106.3 67 77.6
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 9.7e-22 106.3 70 70.0
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 9.7e-22 106.3 67 77.6
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 77.6
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 77.6
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 79.1
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 77.6
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 77.6
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.7e-21 105.5 67 76.1
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 1.7e-21 105.5 67 80.6
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.7e-21 105.5 67 71.6
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 1.7e-21 105.5 67 74.6
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 2.2e-21 105.1 67 74.6
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 2.2e-21 105.1 67 77.6
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 2.8e-21 104.8 67 76.1
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 2.8e-21 104.8 67 76.1
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.8e-21 104.8 67 76.1
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 2.8e-21 104.8 67 73.1
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 3.7e-21 104.4 67 71.6
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 3.7e-21 104.4 67 77.6
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 3.7e-21 104.4 67 73.1
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 3.7e-21 104.4 67 74.6
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 74.6
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 74.6
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 76.1
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 76.1
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 76.1
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 74.6
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 4.8e-21 104.0 67 73.1
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 73.1
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 6.3e-21 103.6 69 73.9
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 74.6
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 74.6
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 76.1
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 71.6
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 77.6
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 6.3e-21 103.6 67 74.6
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 73.1
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 73.1
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 71.6
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 73.1
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 8.2e-21 103.2 67 76.1
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-20 102.8 67 71.6
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-20 102.8 67 71.6
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-20 102.8 67 74.6
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 1.1e-20 102.8 70 71.4
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.1e-20 102.8 67 73.1
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 71.6
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 74.6
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 71.6
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 73.1
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 73.1
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 70.1
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 73.1
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 73.1
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 73.1
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 73.1
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 71.6
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 70.1
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 70.1
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 70.1
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 70.1
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 73.1
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.1e-20 101.3 67 70.1
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.1e-20 101.3 67 71.6
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 71.6
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 73.1
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 4.1e-20 100.9 70 68.6
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 4.1e-20 100.9 67 70.1
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 5.3e-20 100.5 67 73.1
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 6.9e-20 100.1 67 68.7
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 6.9e-20 100.1 67 70.1
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 6.9e-20 100.1 67 71.6
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 9.1e-20 99.8 67 67.2
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 9.1e-20 99.8 67 67.2
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 9.1e-20 99.8 67 67.2
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 70.1
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 70.1
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 68.7
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 68.7
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 68.7
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 68.7
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 2.0e-19 98.6 67 67.2
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.0e-19 98.6 67 67.2
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 2.0e-19 98.6 67 68.7
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 3.4e-19 97.8 67 67.2
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.4e-19 97.8 67 70.1
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 3.4e-19 97.8 67 68.7
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 3.4e-19 97.8 67 68.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.4e-19 97.8 67 70.1
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 4.5e-19 97.4 67 68.7
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 7.7e-19 96.7 67 67.2
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 7.7e-19 96.7 67 67.2
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 1.3e-18 95.9 67 67.2
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 1.3e-18 95.9 67 67.2
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 2.2e-18 95.1 67 68.7
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 2.2e-18 95.1 67 65.7
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.9e-18 94.7 67 70.1
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.9e-18 94.7 94 55.3
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 2.9e-18 94.7 69 68.1
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 8.5e-18 93.2 69 68.1
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.1e-17 92.8 69 66.7
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 9.4e-17 89.7 67 64.2
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.8e-15 85.5 69 55.1
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 3.3e-14 81.3 69 55.1
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 5.7e-14 80.5 53 69.8
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 5.7e-14 80.5 69 53.6
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.7e-13 79.0 69 53.6
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 4.1e-12 74.3 49 71.4
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 5.9e-11 70.5 49 67.3
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 5.9e-11 70.5 68 45.6
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 5.9e-11 70.5 49 65.3
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 7.7e-11 70.1 69 42.0
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 1.0e-10 69.7 69 50.7
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 1.3e-10 69.3 49 65.3
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 1.3e-10 69.3 49 63.3
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.3e-10 69.3 49 65.3
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 3.8e-10 67.8 35 85.7
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 5.0e-10 67.4 69 55.1
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 2.5e-09 65.1 58 51.7
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 2.5e-09 65.1 35 82.9
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 7.2e-09 63.5 36 75.0
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-08 62.8 61 55.7
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 1.6e-08 62.4 67 53.7
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.7e-08 61.6 34 79.4
MCO11G509 Micromonas commoda HOM05D001534 ORTHO05D004495 4.0e-07 57.8 63 52.4
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 5.7e-06 53.9 65 40.0


User provided reference genes

Program Settings