Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 0.0e+00 1091.3 593 100.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 4.6e-88 329.7 565 45.3
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 8.1e-69 265.8 232 65.9
TPR.G18519 Trifolium pratense HOM05D009527 ORTHO05D013850 5.5e-49 199.9 150 71.3
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-27 128.6 322 31.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 3.4e-27 127.5 322 31.4
TPR.G18252 Trifolium pratense HOM05D002500 ORTHO05D002587 5.7e-22 110.2 415 30.8
Medtr3g116255 Medicago truncatula HOM05D029664 ORTHO05D036753 7.4e-22 109.8 175 41.7
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 3.7e-21 107.5 414 27.3
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.6e-19 101.3 170 35.9
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 4.5e-19 100.5 337 30.3
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 7.7e-19 99.8 230 35.2
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.3e-18 99.0 324 29.3
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 6.5e-18 96.7 262 30.2
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 3.2e-17 94.4 168 36.9
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 3.2e-17 94.4 326 29.1
TPR.G29332 Trifolium pratense HOM05D000106 ORTHO05D011406 4.2e-17 94.0 79 62.0
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 5.7e-14 83.6 137 36.5
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 7.4e-14 83.2 320 24.7
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 1.3e-13 82.4 146 35.6
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 2.2e-13 81.6 154 33.8
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 2.2e-13 81.6 154 36.4
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.8e-13 81.3 163 31.9
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 8.2e-13 79.7 269 25.7
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.2e-13 79.7 269 25.7
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.2e-13 79.7 156 33.3
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.4e-12 79.0 149 36.2
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.4e-12 79.0 148 33.1
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.4e-12 78.2 146 35.6
TPR.G35251 Trifolium pratense HOM05D000127 ORTHO05D000792 3.1e-12 77.8 143 39.2
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 4.1e-12 77.4 147 33.3
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 4.1e-12 77.4 156 32.1
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.1e-12 77.4 269 25.3
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 4.1e-12 77.4 156 32.1
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 5.3e-12 77.0 156 32.7
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 5.3e-12 77.0 137 37.2
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 5.3e-12 77.0 157 28.7
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 5.3e-12 77.0 157 29.9
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 7.0e-12 76.6 149 33.6
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 7.0e-12 76.6 144 31.9
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 7.0e-12 76.6 164 29.9
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 7.0e-12 76.6 164 29.9
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.2e-11 75.9 157 32.5
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.2e-11 75.9 149 30.9
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-11 75.5 137 35.8
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-11 75.5 148 33.8
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.6e-11 75.5 137 32.1
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 2.0e-11 75.1 197 31.0
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.0e-11 75.1 137 35.8
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.0e-11 75.1 136 34.6
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 2.6e-11 74.7 147 29.9
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 3.5e-11 74.3 172 32.0
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.5e-11 74.3 137 35.0
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 3.5e-11 74.3 136 33.8
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.5e-11 74.3 147 32.0
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 4.5e-11 73.9 157 33.8
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.5e-11 73.9 149 31.5
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.5e-11 73.9 137 36.5
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 4.5e-11 73.9 137 33.6
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 7.7e-11 73.2 167 31.7
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 7.7e-11 73.2 149 30.9
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 7.7e-11 73.2 157 29.9
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.0e-10 72.8 148 31.8
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.3e-10 72.4 160 33.1
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 1.7e-10 72.0 134 33.6
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.7e-10 72.0 146 33.6
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.2e-10 71.6 137 34.3
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 2.2e-10 71.6 159 34.0
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 2.2e-10 71.6 160 32.5
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 2.2e-10 71.6 160 32.5
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.2e-10 71.6 163 30.1
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 3.8e-10 70.9 160 33.1
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.8e-10 70.9 160 33.1
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 3.8e-10 70.9 198 26.3
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.0e-10 70.5 148 32.4
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 8.5e-10 69.7 163 29.4
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.1e-09 69.3 182 29.1
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.5e-09 68.9 155 32.3
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.5e-09 68.9 157 28.7
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.9e-09 68.6 139 35.3
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.9e-09 68.6 136 33.1
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 2.5e-09 68.2 170 27.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 2.5e-09 68.2 136 30.9
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 3.2e-09 67.8 137 32.1
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 3.2e-09 67.8 146 32.2
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 4.2e-09 67.4 169 30.8
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.2e-09 67.4 193 26.9
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 4.2e-09 67.4 149 26.8
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 5.5e-09 67.0 151 29.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 5.5e-09 67.0 146 29.5
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 7.2e-09 66.6 161 27.3
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 9.4e-09 66.2 164 26.8
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 2.1e-08 65.1 146 30.1
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.0e-07 62.8 197 25.9
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 5.2e-07 60.5 139 30.2
TPR.G21107 Trifolium pratense HOM05D028375 ORTHO05D026205 5.2e-07 60.5 71 45.1
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 8.8e-07 59.7 179 30.2
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.2e-06 59.3 132 31.1
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 2.6e-06 58.2 86 34.9


User provided reference genes

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