Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17174 Trifolium pratense HOM05D002263 ORTHO05D413050 9.6e-61 236.5 108 100.0
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 1.6e-23 112.8 112 51.8
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.9e-18 94.4 96 41.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.9e-18 94.4 111 41.4
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 6.5e-17 90.9 111 38.7
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.5e-17 90.5 112 39.3
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.9e-16 89.4 111 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 4.2e-16 88.2 108 38.9
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 4.2e-16 88.2 111 37.8
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 7.2e-16 87.4 111 35.1
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 7.2e-16 87.4 109 37.6
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 9.4e-16 87.0 112 37.5
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.2e-15 86.7 108 37.0
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.2e-15 86.7 109 36.7
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.6e-15 86.3 107 39.3
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 1.6e-15 86.3 108 37.0
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 1.6e-15 86.3 109 37.6
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.6e-15 86.3 109 36.7
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 2.1e-15 85.9 112 35.7
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 2.7e-15 85.5 108 38.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 2.7e-15 85.5 108 38.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 2.7e-15 85.5 108 38.0
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.7e-15 85.5 111 34.2
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 3.6e-15 85.1 112 35.7
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 3.6e-15 85.1 111 35.1
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 3.6e-15 85.1 111 35.1
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 3.6e-15 85.1 108 36.1
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 4.7e-15 84.7 108 37.0
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 4.7e-15 84.7 108 37.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.7e-15 84.7 108 37.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.1e-15 84.3 111 35.1
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 6.1e-15 84.3 111 35.1
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.1e-15 84.3 111 34.2
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 6.1e-15 84.3 108 37.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 6.1e-15 84.3 109 36.7
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 6.1e-15 84.3 108 36.1
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 6.1e-15 84.3 108 36.1
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 6.1e-15 84.3 108 36.1
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 37.0
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 37.0
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 37.0
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 37.0
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 36.1
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 8.0e-15 84.0 108 36.1
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 8.0e-15 84.0 107 36.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 8.0e-15 84.0 107 36.4
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.0e-14 83.6 108 37.0
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 1.0e-14 83.6 111 35.1
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.0e-14 83.6 108 38.0
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.4e-14 83.2 108 37.0
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.4e-14 83.2 111 34.2
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.4e-14 83.2 108 36.1
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.8e-14 82.8 111 34.2
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.8e-14 82.8 108 35.2
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.8e-14 82.8 108 36.1
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 35.2
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 35.2
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 37.0
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 37.0
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 36.1
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.3e-14 82.4 108 35.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.3e-14 82.4 111 34.2
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.3e-14 82.4 111 34.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 2.3e-14 82.4 109 37.6
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 3.0e-14 82.0 107 37.4
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 3.0e-14 82.0 108 36.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 3.9e-14 81.6 108 36.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.9e-14 81.6 108 35.2
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 3.9e-14 81.6 111 33.3
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 3.9e-14 81.6 111 34.2
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.9e-14 81.6 107 36.4
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 5.2e-14 81.3 112 33.9
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 36.1
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 36.1
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 36.1
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 36.1
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 36.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 5.2e-14 81.3 111 33.3
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 37.0
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 35.2
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.2e-14 81.3 108 35.2
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 5.2e-14 81.3 111 34.2
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 6.7e-14 80.9 108 35.2
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 6.7e-14 80.9 108 35.2
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 6.7e-14 80.9 108 35.2
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 6.7e-14 80.9 108 35.2
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 8.8e-14 80.5 111 36.0
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.8e-14 80.5 111 34.2
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 8.8e-14 80.5 108 35.2
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 1.1e-13 80.1 112 35.7
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.5e-13 79.7 108 34.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.5e-13 79.7 108 36.1
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.5e-13 79.7 113 32.7
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.5e-13 79.7 111 35.1
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.5e-13 79.7 110 36.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.0e-13 79.3 97 35.1
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.0e-13 79.3 108 34.3
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.0e-13 79.3 108 34.3
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 2.0e-13 79.3 112 33.9
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 2.0e-13 79.3 108 34.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.0e-13 79.3 111 32.4
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.0e-13 79.3 108 34.3
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 2.0e-13 79.3 108 34.3
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 2.6e-13 79.0 113 31.0
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 2.6e-13 79.0 108 34.3
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 2.6e-13 79.0 108 34.3
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 3.3e-13 78.6 81 39.5
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 3.3e-13 78.6 108 34.3
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 3.3e-13 78.6 108 34.3
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.4e-13 78.2 111 35.1
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 4.4e-13 78.2 111 35.1
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 4.4e-13 78.2 109 33.9
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 4.4e-13 78.2 108 34.3
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 4.4e-13 78.2 80 37.5
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 5.7e-13 77.8 109 34.9
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 5.7e-13 77.8 108 35.2
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 5.7e-13 77.8 108 33.3
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 5.7e-13 77.8 110 36.4
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 7.4e-13 77.4 109 34.9
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 7.4e-13 77.4 108 34.3
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 7.4e-13 77.4 108 38.9
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 9.7e-13 77.0 108 33.3
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 9.7e-13 77.0 109 32.1
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 9.7e-13 77.0 111 32.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 9.7e-13 77.0 108 34.3
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 9.7e-13 77.0 94 31.9
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.3e-12 76.6 110 33.6
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.7e-12 76.3 108 33.3
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 2.2e-12 75.9 97 40.2
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 3.7e-12 75.1 109 33.9
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 3.7e-12 75.1 109 33.9
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 3.7e-12 75.1 102 38.2
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.7e-12 75.1 111 33.3
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 4.8e-12 74.7 109 34.9
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.8e-11 72.8 109 32.1
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.4e-11 72.4 94 31.9
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 3.1e-11 72.0 72 37.5
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 7.0e-11 70.9 109 32.1
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 9.1e-11 70.5 82 36.6
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.2e-10 70.1 85 35.3
Hma1.2p1_0326F.1_g126210 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.0e-10 69.3 72 36.1
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.9e-10 67.8 110 33.6
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-09 67.0 94 35.1
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-09 67.0 93 35.5
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 1.3e-09 66.6 88 36.4
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 3.8e-09 65.1 83 34.9
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 8.5e-09 63.9 110 30.9
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 1.9e-08 62.8 83 33.7
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 1.9e-08 62.8 83 33.7
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.6e-07 59.7 55 43.6
BcaC05g29614 Brassica carinata HOM05D002263 ORTHO05D027778 2.7e-07 58.9 72 34.7
C05p59090 Brassica napus HOM05D002263 ORTHO05D027778 2.7e-07 58.9 72 34.7
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.8e-06 56.2 83 31.3
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 5.2e-06 54.7 94 28.7
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 8.8e-06 53.9 68 33.8
SHI26139 Sapria himalayana HOM05D002263 ORTHO05D003537 8.8e-06 53.9 80 32.5


User provided reference genes

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