Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 0.0e+00 1166.0 665 100.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 0.0e+00 1078.2 670 88.1
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 6.5e-309 1063.5 665 87.5
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 5.5e-308 1060.4 637 90.6
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.4e-282 976.1 666 81.8
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.2e-278 963.0 665 79.8
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-277 959.5 552 91.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.0e-273 945.7 633 84.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.2e-272 942.2 633 80.6
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.8e-272 941.8 708 78.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 7.0e-271 937.2 665 80.8
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.9e-268 929.1 668 81.7
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.6e-267 924.9 667 79.6
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.9e-261 904.8 703 72.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.9e-252 875.9 683 73.1
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 7.1e-247 857.4 648 71.9
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 1.4e-242 843.2 635 72.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.1e-239 831.6 673 71.6
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 6.0e-238 827.8 671 71.5
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 6.6e-237 824.3 672 69.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.8e-235 818.9 673 66.9
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.8e-234 816.2 673 70.9
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 9.0e-234 813.9 670 69.0
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.2e-233 813.5 675 69.5
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.0e-233 812.8 635 72.9
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.7e-232 809.7 634 72.4
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 3.8e-232 808.5 670 70.4
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.1e-231 807.0 673 68.2
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.9e-231 806.2 673 69.1
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.8e-230 800.8 612 69.6
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.7e-229 799.7 629 70.6
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.1e-229 798.1 675 68.7
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.5e-228 795.8 634 67.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.3e-228 795.4 672 68.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.3e-228 795.4 671 66.8
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 4.3e-228 795.0 634 67.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.3e-228 794.3 671 66.5
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 6.2e-227 791.2 667 68.8
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 8.1e-227 790.8 667 67.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.4e-226 789.3 683 66.3
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.1e-226 788.9 651 70.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.1e-226 788.9 667 68.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 3.1e-226 788.9 673 67.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 5.3e-226 788.1 634 67.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 9.0e-226 787.3 675 67.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.4e-225 785.4 667 69.1
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.5e-225 785.0 667 68.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 4.5e-225 785.0 667 69.1
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 3.8e-224 781.9 634 67.7
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.9e-224 781.6 667 68.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.4e-224 780.8 634 67.2
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-223 780.4 650 68.9
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.4e-223 778.1 634 67.0
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.7e-222 775.8 653 67.4
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 7.9e-222 774.2 673 67.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-221 772.3 663 65.6
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 6.7e-221 771.2 671 63.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.6e-220 768.1 661 66.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 2.1e-219 766.1 654 66.1
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 8.1e-219 764.2 689 65.5
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.0e-218 761.9 673 65.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 6.9e-218 761.1 668 63.3
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 7.6e-217 757.7 670 67.5
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.3e-216 756.9 661 65.5
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-215 753.8 675 67.3
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.2e-214 750.4 672 61.8
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 4.6e-214 748.4 679 63.3
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.8e-213 746.5 669 64.4
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.3e-213 746.1 670 63.7
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 3.0e-213 745.7 675 67.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.3e-212 742.3 681 65.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.3e-211 740.3 669 61.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.7e-211 738.8 759 60.5
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 8.2e-211 737.6 672 64.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 8.2e-211 737.6 572 69.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-210 736.5 672 61.5
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.8e-210 736.5 672 61.5
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-210 736.5 672 61.5
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.4e-210 736.1 670 63.3
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.0e-210 735.3 623 64.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 4.0e-210 735.3 639 62.8
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 9.0e-210 734.2 634 64.8
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 9.0e-210 734.2 673 61.1
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-209 733.4 668 61.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.8e-208 728.8 698 61.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 8.4e-208 727.6 670 63.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.4e-207 726.9 631 63.5
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.5e-207 726.1 657 62.1
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.2e-207 725.7 671 62.7
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.0e-205 720.7 682 60.0
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.1e-204 717.2 659 60.1
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 4.3e-204 715.3 636 61.3
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 8.2e-203 711.1 636 66.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.4e-202 710.3 639 61.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 4.2e-199 698.7 673 58.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.1e-196 690.6 686 63.7
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 5.7e-196 688.3 638 61.9
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 4.8e-195 685.3 678 61.7
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.4e-194 683.7 584 65.4
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.2e-192 676.4 553 72.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.5e-192 674.9 672 60.6
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.0e-188 663.3 672 54.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.2e-187 659.8 679 57.4
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.8e-186 656.8 562 64.9
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.1e-186 656.0 651 60.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.1e-186 655.6 639 57.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.2e-185 654.1 673 58.8
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 3.6e-182 642.5 458 82.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.6e-180 636.3 524 66.4
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.7e-179 632.5 451 82.7
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.2e-175 619.0 634 57.3
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 3.0e-173 612.8 511 71.0
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-171 607.4 668 54.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 4.5e-169 599.0 616 55.4
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.3e-168 597.4 669 54.0
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.8e-165 585.1 643 52.3
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 5.7e-164 582.0 511 66.5
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 9.5e-159 564.7 547 58.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.8e-157 558.5 480 63.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 4.0e-149 532.7 633 49.6
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.1e-141 508.1 635 46.8
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 9.8e-140 501.5 672 49.6
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 6.0e-137 492.3 341 82.1
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 5.6e-135 485.7 550 52.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-131 474.2 462 55.4
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.9e-131 472.6 453 62.0
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.6e-129 467.6 494 55.7
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 4.7e-126 456.1 682 41.2
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 2.1e-113 414.1 381 57.2
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 7.9e-105 385.6 623 42.2
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.7e-104 382.5 338 67.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.9e-103 380.9 635 40.3
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-101 374.8 415 49.9
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.0e-88 332.0 349 61.3
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 3.6e-65 253.8 154 87.7
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.9e-64 250.4 248 59.3
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 8.8e-64 249.2 154 85.7
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.4e-63 246.9 222 58.6
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 3.7e-62 243.8 655 33.0
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 9.1e-61 239.2 206 58.3
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 6.5e-59 233.0 177 75.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.5e-58 231.9 325 47.1
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.2e-58 230.7 213 61.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.1e-53 215.7 167 68.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.8e-51 207.2 186 60.2
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.2e-50 203.8 749 29.9
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.7e-49 200.3 167 71.9
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 4.9e-46 190.3 191 59.7
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.8e-45 188.3 658 29.3
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.8e-43 180.6 148 63.5
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.2e-41 175.6 176 57.4
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.0e-40 171.0 126 70.6
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 4.4e-39 167.2 176 55.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.3e-38 165.6 119 73.1
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 5.0e-35 153.7 107 72.9
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-33 149.1 136 64.7
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 5.2e-32 143.7 148 57.4
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 8.9e-32 142.9 91 83.5
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 8.9e-32 142.9 91 83.5
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 8.9e-32 142.9 91 83.5
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.0e-27 129.4 147 49.7
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.3e-27 129.0 79 78.5
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.5e-26 125.6 90 74.4
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.0e-24 117.5 101 60.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.6e-19 100.1 91 58.2
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.5e-18 99.0 97 56.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.2e-17 95.9 94 57.4
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-17 95.1 124 59.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.1e-16 91.3 91 56.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.0e-16 90.9 58 81.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.0e-16 90.9 96 53.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-14 85.5 78 60.3
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 6.4e-14 83.6 86 50.0
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 1.0e-11 76.3 59 61.0
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.9e-11 74.3 148 39.9
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-10 72.4 49 65.3
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 3.3e-10 71.2 82 45.1
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.2e-09 69.3 622 23.5
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.8e-08 63.5 160 38.1
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.9e-06 57.4 47 68.1
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 8.4e-06 56.6 47 55.3


User provided reference genes

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