Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 3.1e-187 658.3 333 100.0
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 7.5e-165 583.9 333 88.9
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 6.9e-150 534.3 332 81.3
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 3.7e-135 485.3 331 77.0
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 8.1e-135 484.2 333 74.8
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 1.7e-132 476.5 331 75.8
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 4.9e-132 474.9 333 74.2
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 1.1e-131 473.8 329 73.6
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 3.0e-129 465.7 333 70.6
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 4.3e-128 461.8 333 70.0
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.3e-124 450.3 345 69.9
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 4.8e-119 431.8 264 82.6
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 8.2e-111 404.4 335 61.8
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 3.1e-110 402.5 338 59.8
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 2.5e-107 392.9 332 60.2
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 2.1e-106 389.8 333 63.1
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 5.1e-105 385.2 334 62.3
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 8.8e-105 384.4 337 59.3
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 2.6e-104 382.9 334 61.7
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 9.7e-104 380.9 333 56.2
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 1.3e-103 380.6 334 58.7
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.2e-103 379.8 334 60.8
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 9.1e-102 374.4 321 59.2
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.2e-101 374.0 337 58.8
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 2.6e-101 372.9 339 56.6
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 7.7e-101 371.3 334 58.4
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 2.2e-100 369.8 337 55.5
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 2.3e-97 359.8 334 54.5
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 8.8e-97 357.8 339 55.8
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 2.6e-96 356.3 333 54.1
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 1.7e-95 353.6 337 54.0
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 8.2e-95 351.3 337 54.0
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 7.7e-93 344.7 336 54.5
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 5.0e-92 342.0 331 52.6
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 5.0e-92 342.0 342 52.9
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.9e-91 340.1 338 54.4
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 4.2e-91 339.0 359 51.0
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 5.5e-91 338.6 336 53.3
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 9.4e-91 337.8 349 53.0
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.2e-90 337.4 336 53.3
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 2.1e-90 336.7 331 53.8
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.4e-89 334.0 327 51.7
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 6.8e-89 331.6 384 47.9
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 4.4e-88 328.9 335 52.8
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 9.7e-88 327.8 344 49.7
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 9.7e-88 327.8 331 54.4
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.8e-87 325.5 335 52.8
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.1e-86 324.3 336 52.7
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.8e-86 323.6 335 52.5
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.8e-86 323.6 335 52.5
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 2.4e-86 323.2 337 50.7
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 4.1e-86 322.4 334 52.4
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 2.7e-85 319.7 337 52.2
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 4.5e-85 318.9 327 51.1
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.3e-84 317.4 334 52.1
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 2.2e-84 316.6 324 50.6
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 6.5e-84 315.1 333 52.9
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.5e-84 314.7 344 48.0
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 9.4e-83 311.2 359 49.0
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 3.0e-81 306.2 328 50.3
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 1.2e-80 304.3 328 51.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 2.0e-80 303.5 315 50.2
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 1.3e-79 300.8 337 48.1
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.7e-79 300.4 342 48.2
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 4.1e-78 295.8 335 48.1
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 9.1e-78 294.7 310 48.1
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 2.0e-77 293.5 277 55.6
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 2.7e-77 293.1 340 48.8
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 2.7e-77 293.1 366 47.3
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 2.3e-76 290.0 333 46.8
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 9.5e-75 284.6 354 46.0
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 6.1e-74 282.0 354 45.5
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 3.4e-72 276.2 351 44.7
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 9.8e-72 274.6 325 47.4
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.8e-70 270.4 310 47.7
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.2e-69 267.7 315 46.3
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 2.0e-69 266.9 319 47.3
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 2.0e-69 266.9 326 46.0
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.0e-68 264.6 255 51.8
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 3.9e-68 262.7 343 44.6
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 6.6e-68 261.9 324 45.1
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 8.6e-68 261.5 340 43.2
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.5e-67 260.8 287 50.9
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.5e-67 260.0 201 64.2
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 2.5e-67 260.0 343 44.9
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 3.3e-67 259.6 325 44.9
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 3.3e-67 259.6 325 44.9
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 1.2e-66 257.7 328 45.7
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.6e-66 257.3 330 44.8
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 2.1e-66 256.9 325 44.3
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 6.1e-66 255.4 287 48.8
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.4e-65 254.2 220 57.7
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.3e-65 253.4 329 45.3
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 5.2e-65 252.3 250 53.6
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 3.4e-64 249.6 269 46.8
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.9e-62 243.8 350 41.1
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 1.9e-62 243.8 279 48.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 1.6e-61 240.7 320 42.8
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 3.3e-59 233.0 212 55.2
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 9.5e-59 231.5 212 54.2
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.4e-57 227.6 298 45.0
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 1.8e-57 227.3 242 48.3
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.8e-57 227.3 338 41.4
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 2.0e-56 223.8 259 48.3
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.7e-55 220.7 250 50.0
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 8.1e-50 201.8 195 55.9
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 5.2e-49 199.1 213 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 2.0e-48 197.2 208 47.6
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 9.9e-48 194.9 200 48.0
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.7e-44 184.1 253 42.7
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.0e-44 183.3 202 47.5
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.5e-43 181.0 208 46.2
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.2e-42 177.9 149 55.7
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 1.4e-41 174.5 200 45.0
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 3.1e-41 173.3 244 39.8
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.8e-39 166.4 200 45.5
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.2e-38 163.3 200 44.5
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 3.3e-35 153.3 135 54.8
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 7.3e-35 152.1 198 39.9
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.4e-32 142.9 145 53.8
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 2.1e-29 134.0 121 53.7
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 1.4e-22 111.3 209 34.9
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.8e-18 97.1 86 61.6
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 4.0e-17 93.2 86 57.0
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 2.5e-11 73.9 202 31.2
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 3.1e-09 67.0 166 33.7
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 8.4e-07 58.9 117 35.9


User provided reference genes

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