Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 9.2e-251 869.8 447 100.0
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 3.3e-192 675.2 440 81.1
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.9e-187 659.4 432 81.5
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.2e-186 656.8 445 80.7
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 1.9e-155 553.1 440 68.9
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 3.3e-155 552.4 432 70.1
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 2.3e-153 546.2 441 67.8
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 1.1e-150 537.3 435 65.1
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 7.0e-150 534.6 440 66.8
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.0e-148 530.8 442 65.6
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 4.0e-145 518.8 439 64.9
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.9e-142 510.0 440 64.1
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 1.1e-123 447.6 444 56.1
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.0e-120 436.8 327 66.1
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 9.9e-120 434.5 349 65.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 2.2e-119 433.3 453 52.8
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 2.9e-119 433.0 450 54.9
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.9e-118 430.3 425 56.5
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 3.2e-118 429.5 438 56.6
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 3.2e-118 429.5 442 55.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 3.5e-117 426.0 438 56.6
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 4.6e-117 425.6 338 65.7
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 1.8e-116 423.7 437 55.6
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 1.8e-116 423.7 394 58.6
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 3.9e-116 422.5 442 52.3
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 6.7e-116 421.8 339 65.5
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 1.1e-115 421.0 336 64.3
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 5.6e-115 418.7 440 53.9
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 1.6e-114 417.2 385 58.2
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 1.5e-112 410.6 354 61.6
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-112 410.2 391 58.6
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 4.5e-112 409.1 435 52.2
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 7.6e-112 408.3 425 55.1
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.7e-111 407.1 391 58.6
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.7e-111 407.1 391 58.6
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 2.2e-111 406.8 446 53.1
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.2e-111 406.8 439 51.9
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 2.9e-111 406.4 425 54.8
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 3.8e-111 406.0 395 57.0
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 6.4e-111 405.2 443 52.6
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-110 404.1 328 63.7
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.9e-110 403.7 339 63.1
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 5.5e-110 402.1 336 61.9
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 9.3e-110 401.4 321 64.5
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 2.7e-109 399.8 438 51.1
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 4.6e-109 399.1 441 52.8
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 6.0e-109 398.7 447 51.9
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 1.0e-108 397.9 302 65.6
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.3e-108 397.5 429 53.6
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 1.8e-108 397.1 308 64.6
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 2.3e-108 396.7 321 62.0
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 2.3e-108 396.7 393 56.0
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.3e-108 396.7 332 61.4
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 3.0e-108 396.4 304 65.8
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 3.0e-108 396.4 436 51.4
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 3.9e-108 396.0 321 60.7
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 6.7e-108 395.2 332 63.0
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 8.7e-108 394.8 323 62.2
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 1.9e-107 393.7 379 57.5
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.5e-107 393.3 297 68.0
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 3.3e-107 392.9 498 46.8
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 5.6e-107 392.1 437 51.3
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 2.1e-106 390.2 403 56.1
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.1e-105 387.9 448 49.3
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 1.4e-105 387.5 326 59.5
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.1e-105 386.3 451 49.2
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 9.0e-105 384.8 332 62.0
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 2.6e-104 383.3 320 60.9
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 3.4e-104 382.9 326 62.0
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 4.5e-104 382.5 283 67.5
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 2.2e-103 380.2 283 67.1
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 2.2e-103 380.2 283 67.1
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 2.9e-103 379.8 283 66.8
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 6.5e-103 378.6 283 66.8
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 6.5e-103 378.6 283 66.8
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 9.3e-102 374.8 386 52.6
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 6.1e-101 372.1 448 48.4
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 2.3e-100 370.2 330 58.8
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.3e-100 370.2 291 63.2
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 8.7e-100 368.2 330 58.5
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 7.4e-99 365.2 319 57.7
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 1.8e-97 360.5 295 63.1
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 3.4e-96 356.3 319 58.9
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.0e-95 354.8 321 58.3
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 5.0e-95 352.4 321 57.9
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.1e-94 351.3 422 49.1
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 4.6e-93 345.9 323 56.7
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 3.3e-91 339.7 407 49.6
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 2.2e-90 337.0 324 55.9
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 3.7e-90 336.3 374 48.9
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.4e-89 334.3 351 53.0
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 2.0e-88 330.5 351 51.9
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 6.5e-87 325.5 374 49.5
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 4.2e-86 322.8 390 47.7
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 9.4e-86 321.6 331 52.3
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 1.1e-83 314.7 423 44.7
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.5e-80 304.3 339 47.2
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 8.5e-79 298.5 394 47.0
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.2e-77 294.7 349 50.1
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.7e-77 292.7 426 44.4
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 1.0e-76 291.6 281 53.0
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.3e-76 290.4 372 44.4
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.3e-74 284.6 266 54.1
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 3.6e-69 266.5 456 40.4
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 8.0e-69 265.4 255 57.3
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 6.8e-68 262.3 378 43.7
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.2e-67 261.5 319 43.9
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 6.3e-66 255.8 225 62.7
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 2.4e-65 253.8 270 50.0
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 2.7e-64 250.4 268 50.0
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.8e-60 237.7 239 50.2
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.5e-56 223.0 225 48.4
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.3e-55 221.5 247 47.0
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.1e-54 218.4 263 44.1
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.4e-49 200.7 258 44.6
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 3.3e-30 137.1 204 37.3
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.3e-30 136.7 204 36.8
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 8.1e-29 132.5 135 50.4
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 2.9e-26 124.0 192 34.9
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.2e-24 118.6 71 84.5
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.2e-24 118.6 108 56.5
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.2e-24 118.6 76 76.3
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.6e-24 116.7 277 33.2
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.3e-23 115.2 242 31.4
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.9e-22 111.3 191 33.5
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.4e-20 105.1 191 31.9
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.4e-20 105.1 190 33.2
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 6.8e-20 102.8 88 55.7
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 8.9e-20 102.4 84 58.3
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 8.9e-20 102.4 84 58.3
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 9.3e-17 92.4 159 34.0
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.2e-16 92.0 71 60.6
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.6e-16 91.7 194 30.9
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.1e-16 91.3 60 73.3
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 3.9e-15 87.0 56 73.2
Cre01.g035750 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 5.8e-11 73.2 143 34.3
MCO04G456 Micromonas commoda HOM05D002409 ORTHO05D002557 2.9e-10 70.9 169 30.8
Medtr8g031050 Medicago truncatula HOM05D004707 ORTHO05D005837 1.4e-09 68.6 108 38.9
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 4.2e-09 67.0 70 44.3
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 9.3e-09 65.9 70 45.7
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 1.2e-08 65.5 113 31.0
Cre01.g035600 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 2.3e-07 61.2 191 28.3
PRCOL_00003228 Prasinoderma coloniale HOM05D002409 ORTHO05D002557 2.3e-07 61.2 150 28.0
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 3.0e-07 60.8 71 43.7
MBI01_g45834_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 9.6e-06 55.8 36 77.8
MBI18_g40888_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 9.6e-06 55.8 36 77.8


User provided reference genes

Program Settings