Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1400 Trifolium pratense HOM05D003614 ORTHO05D004156 0.0e+00 1555.8 826 100.0
TPR.G5668 Trifolium pratense HOM05D003614 ORTHO05D004156 0.0e+00 1284.6 798 84.8
Psat5g223160 Pisum sativum HOM05D003614 ORTHO05D004156 0.0e+00 1169.1 906 70.4
Lj3g0020898 Lotus japonicus HOM05D003614 ORTHO05D004156 4.7e-293 1011.1 837 65.6
Glyma.17G135400 Glycine max HOM05D003614 ORTHO05D004156 5.1e-279 964.5 831 63.1
Ca_00254_v3 Cicer arietinum L. HOM05D003614 ORTHO05D004156 6.4e-274 947.6 630 77.5
Phvul.003G215300 Phaseolus vulgaris HOM05D003614 ORTHO05D004156 1.1e-265 920.2 829 61.0
VMungo1215G0817 Vigna mungo HOM05D003614 ORTHO05D004156 1.1e-262 910.2 829 60.2
arahy.Tifrunner.gnm1.ann1.8A3W3K Arachis hypogaea HOM05D003614 ORTHO05D004156 1.9e-257 892.9 778 62.0
Lalb_Chr21g0312211 Lupinus albus HOM05D003614 ORTHO05D004156 3.4e-251 872.1 779 60.3
MD02G1287300 Malus domestica HOM05D003614 ORTHO05D004156 6.3e-237 824.7 775 56.8
QL10p043434 Quercus lobata HOM05D003614 ORTHO05D004156 4.1e-236 822.0 776 57.6
Cfa002904 Carpinus fangiana HOM05D003614 ORTHO05D004156 7.5e-230 801.2 776 56.3
RcHm_v2.0_Chr1g0323821 Rosa chinensis HOM05D003614 ORTHO05D004156 8.2e-229 797.7 775 55.5
Haze_25257 Corylus avellana HOM05D003614 ORTHO05D004156 1.4e-228 797.0 776 56.3
FAN06G2474 Fragaria x ananassa HOM05D003614 ORTHO05D004156 2.7e-227 792.7 777 55.3
FvH4_7g02870 Fragaria vesca HOM05D003614 ORTHO05D004156 1.0e-226 790.8 798 54.4
FAN03G2482 Fragaria x ananassa HOM05D003614 ORTHO05D004156 2.9e-226 789.3 775 55.1
Gohir.D09G211130 Gossypium hirsutum HOM05D003614 ORTHO05D004156 6.5e-226 788.1 776 55.2
TAR628G1743 Trochodendron aralioides HOM05D003614 ORTHO05D004156 4.2e-225 785.4 776 54.4
Atru.chr4.881 Acer truncatum HOM05D003614 ORTHO05D004156 4.7e-224 781.9 777 54.1
Nitab4.5_0000573g0140 Nicotiana tabacum HOM05D003614 ORTHO05D004156 1.7e-221 773.5 754 54.9
Sabra05G0053000 Salix brachista HOM05D003614 ORTHO05D004156 7.0e-220 768.1 777 52.9
Sopen09g004990 Solanum pennellii HOM05D003614 ORTHO05D004156 1.0e-218 764.2 754 54.1
PGSC0003DMG400008935 Solanum tuberosum HOM05D003614 ORTHO05D004156 3.8e-218 762.3 789 52.9
Solyc09g010285.1 Solanum lycopersicum HOM05D003614 ORTHO05D004156 7.2e-217 758.1 754 53.8
CANSAT11G2476 Cannabis sativa HOM05D003614 ORTHO05D004156 2.1e-216 756.5 777 53.9
Potri.005G063750 Populus trichocarpa HOM05D003614 ORTHO05D004156 2.1e-216 756.5 776 53.0
vmacro12792 Vaccinium macrocarpon HOM05D003614 ORTHO05D004156 1.0e-215 754.2 777 53.3
CAN.G397.92 Capsicum annuum HOM05D003614 ORTHO05D004156 6.8e-215 751.5 754 53.3
Manes.09G100100 Manihot esculenta HOM05D003614 ORTHO05D004156 1.2e-214 750.7 776 52.1
TWI74G0358 Tripterygium wilfordii HOM05D003614 ORTHO05D004156 9.8e-214 747.7 776 53.7
Nn3g18642 Nelumbo nucifera HOM05D003614 ORTHO05D004156 1.3e-213 747.3 776 51.8
Rhsim10G0133600 Rhododendron simsii HOM05D003614 ORTHO05D004156 9.2e-212 741.1 765 53.2
Sc03g0004310 Simmondsia chinensis HOM05D003614 ORTHO05D004156 5.9e-211 738.4 776 51.5
MSTRG.10382 Avicennia marina HOM05D003614 ORTHO05D004156 1.9e-209 733.4 775 51.2
DCAR_014331 Daucus carota HOM05D003614 ORTHO05D004156 1.2e-208 730.7 778 51.4
AUR62003572 Chenopodium quinoa HOM05D003614 ORTHO05D004156 6.1e-208 728.4 727 53.5
Lsat_1_v5_gn_6_112880 Lactuca sativa HOM05D003614 ORTHO05D004156 8.0e-208 728.0 776 50.3
PGR119G0394 Punica granatum HOM05D003614 ORTHO05D004156 1.9e-204 716.8 784 49.7
AT1G74350 Arabidopsis thaliana HOM05D003614 ORTHO05D004156 1.6e-203 713.8 778 50.9
ECA233G5653 Erigeron canadensis HOM05D003614 ORTHO05D004156 1.6e-203 713.8 778 49.5
ClCG04G005530 Citrullus lanatus HOM05D003614 ORTHO05D004156 6.0e-203 711.8 752 52.4
BraA07t31560Z Brassica rapa HOM05D003614 ORTHO05D004156 7.8e-203 711.4 777 49.9
Aqoxy6G00302 Aquilegia oxysepala HOM05D003614 ORTHO05D004156 1.0e-202 711.1 776 50.5
A07p40160 Brassica napus HOM05D003614 ORTHO05D004156 1.3e-202 710.7 777 50.1
Ah.02g121610 Amaranthus hybridus HOM05D003614 ORTHO05D004156 1.5e-201 707.2 777 49.9
HanXRQChr17g0536801 Helianthus annuus HOM05D003614 ORTHO05D004156 2.5e-201 706.4 778 49.4
Sp5g29510 Schrenkiella parvula HOM05D003614 ORTHO05D004156 4.3e-201 705.7 777 50.6
C06p48510 Brassica napus HOM05D003614 ORTHO05D004156 1.6e-200 703.7 778 50.3
unitig_8.g4728 Utricularia gibba HOM05D003614 ORTHO05D004156 2.1e-200 703.4 777 50.6
Dinv07113 Davidia involucrata HOM05D003614 ORTHO05D004156 5.2e-199 698.7 776 51.8
BolC6t39880H Brassica oleracea HOM05D003614 ORTHO05D004156 6.8e-199 698.4 778 49.7
Aa31LG4G4600 Aethionema arabicum HOM05D003614 ORTHO05D004156 2.0e-198 696.8 781 49.9
BcaC08g46865 Brassica carinata HOM05D003614 ORTHO05D004156 3.4e-198 696.0 772 50.3
Migut.L01806 Erythranthe guttata HOM05D003614 ORTHO05D004156 3.4e-198 696.0 754 51.1
AL2G34200 Arabidopsis lyrata HOM05D003614 ORTHO05D004156 7.5e-198 694.9 783 49.4
MELO3C008840.2 Cucumis melo HOM05D003614 ORTHO05D004156 7.5e-198 694.9 775 51.1
AUR62017887 Chenopodium quinoa HOM05D003614 ORTHO05D004156 1.4e-196 690.6 776 50.4
CsaV3_4G012020 Cucumis sativus L. HOM05D003614 ORTHO05D004156 1.2e-195 687.6 775 50.5
COL.COLO4_35758 Corchorus olitorius HOM05D003614 ORTHO05D004156 3.9e-194 682.6 734 51.4
SGA_v2.0_scaffold35G14037 Striga asiatica HOM05D003614 ORTHO05D004156 3.9e-194 682.6 763 49.3
Gohir.A09G213532 Gossypium hirsutum HOM05D003614 ORTHO05D004156 8.6e-194 681.4 776 50.5
SHI13956 Sapria himalayana HOM05D003614 ORTHO05D004156 1.6e-192 677.2 779 48.5
Actinidia06613 Actinidia chinensis HOM05D003614 ORTHO05D004156 6.8e-191 671.8 777 49.8
PSO017G0346 Papaver somniferum HOM05D003614 ORTHO05D004156 2.9e-189 666.4 777 47.5
PSO017G1060 Papaver somniferum HOM05D003614 ORTHO05D004156 2.4e-188 663.3 777 47.5
CSS0046512 Camellia sinensis var. sinensis HOM05D003614 ORTHO05D004156 8.1e-184 648.3 760 49.9
Zm00001eb387540 Zea mays HOM05D003614 ORTHO05D004156 2.7e-163 580.1 779 42.1
Os06g0634100 Oryza sativa ssp. japonica HOM05D003614 ORTHO05D004156 5.1e-162 575.9 787 42.4
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 6.2e-160 568.9 617 52.2
HPP92_024090 Vanilla planifolia HOM05D003614 ORTHO05D004156 2.4e-159 567.0 777 42.2
ATR0691G002 Amborella trichopoda HOM05D003614 ORTHO05D004156 8.7e-146 521.9 750 40.0
Lj4C836G14 Lonicera japonica HOM05D003614 ORTHO05D004156 5.1e-138 496.1 571 48.7
SEGI_08289 Sequoiadendron giganteum HOM05D003614 ORTHO05D004156 3.2e-108 397.1 803 32.5
CDE05G2135 Ceratophyllum demersum HOM05D003614 ORTHO05D004156 1.2e-102 378.6 535 43.0
SEGI_12312 Sequoiadendron giganteum HOM05D003614 ORTHO05D004156 1.1e-100 372.1 773 32.2
Ciclev10003761m.g Citrus clementina HOM05D003614 ORTHO05D004156 3.3e-92 344.0 467 45.6
Rhsim10G0133500 Rhododendron simsii HOM05D003614 ORTHO05D004156 2.2e-88 331.3 649 37.1
SEGI_09252 Sequoiadendron giganteum HOM05D003614 ORTHO05D004156 6.4e-56 223.4 834 25.1
MBI14_g19444_MAGBIO Magnolia biondii HOM05D003614 ORTHO05D004156 5.1e-53 213.8 763 26.6
Cfa016733 Carpinus fangiana HOM05D003614 ORTHO05D004156 2.5e-52 211.5 806 26.1
Haze_19741 Corylus avellana HOM05D003614 ORTHO05D004156 7.3e-52 209.9 786 25.8
Sopen03g006270 Solanum pennellii HOM05D003614 ORTHO05D004156 4.8e-51 207.2 758 25.7
PGSC0003DMG400022532 Solanum tuberosum HOM05D003614 ORTHO05D004156 1.8e-50 205.3 821 25.1
QL07p005711 Quercus lobata HOM05D003614 ORTHO05D004156 3.1e-50 204.5 806 26.2
QL07p006066 Quercus lobata HOM05D003614 ORTHO05D004156 3.1e-50 204.5 806 26.2
Oeu008197.1 Olea europaea HOM05D003614 ORTHO05D004156 4.0e-50 204.1 757 25.6
TAR580G0003 Trochodendron aralioides HOM05D003614 ORTHO05D004156 5.3e-50 203.8 826 25.5
CiPaw.09G043900 Carya illinoinensis HOM05D003614 ORTHO05D004156 6.9e-50 203.4 815 26.5
Sp6g38700 Schrenkiella parvula HOM05D003614 ORTHO05D004156 1.2e-49 202.6 823 24.9
A10p32060 Brassica napus HOM05D003614 ORTHO05D004156 1.5e-49 202.2 758 25.7
Rhsim03G0033800 Rhododendron simsii HOM05D003614 ORTHO05D004156 1.5e-49 202.2 806 25.8
BraA10t45251Z Brassica rapa HOM05D003614 ORTHO05D004156 3.4e-49 201.1 760 25.5
Potri.006G043650 Populus trichocarpa HOM05D003614 ORTHO05D004156 1.3e-48 199.1 830 26.4
Sed0022963 Sechium edule HOM05D003614 ORTHO05D004156 1.7e-48 198.7 815 25.2
arahy.Tifrunner.gnm1.ann1.MR16VB Arachis hypogaea HOM05D003614 ORTHO05D004156 3.8e-48 197.6 785 26.1
arahy.Tifrunner.gnm1.ann1.P66LNP Arachis hypogaea HOM05D003614 ORTHO05D004156 3.8e-48 197.6 785 26.1
CAN.G1237.32 Capsicum annuum HOM05D003614 ORTHO05D004156 3.8e-48 197.6 759 25.0
ECA248G3258 Erigeron canadensis HOM05D003614 ORTHO05D004156 3.8e-48 197.6 825 24.8
Dinv00797 Davidia involucrata HOM05D003614 ORTHO05D004156 6.4e-48 196.8 820 25.1
SGA_v2.0_scaffold94G28503 Striga asiatica HOM05D003614 ORTHO05D004156 6.4e-48 196.8 761 24.6
AL6G13670 Arabidopsis lyrata HOM05D003614 ORTHO05D004156 2.4e-47 194.9 769 25.4
Sabra06G0029800 Salix brachista HOM05D003614 ORTHO05D004156 3.2e-47 194.5 823 25.9
CSS0031196 Camellia sinensis var. sinensis HOM05D003614 ORTHO05D004156 4.2e-47 194.1 765 24.3
MELO3C025378.2 Cucumis melo HOM05D003614 ORTHO05D004156 4.2e-47 194.1 763 25.0
Manes.08G056200 Manihot esculenta HOM05D003614 ORTHO05D004156 4.2e-47 194.1 804 25.6
Nn1g04314 Nelumbo nucifera HOM05D003614 ORTHO05D004156 4.2e-47 194.1 788 25.3
Ca_02700_v3 Cicer arietinum L. HOM05D003614 ORTHO05D004156 1.6e-46 192.2 840 25.4
Aqoxy5G04186 Aquilegia oxysepala HOM05D003614 ORTHO05D004156 2.1e-46 191.8 767 24.5
C09p72780 Brassica napus HOM05D003614 ORTHO05D004156 2.1e-46 191.8 810 24.9
BolC9t60016H Brassica oleracea HOM05D003614 ORTHO05D004156 2.1e-46 191.8 810 24.9
Thhalv10012522m.g Eutrema salsugineum HOM05D003614 ORTHO05D004156 2.1e-46 191.8 809 24.5
CsaV3_3G005150 Cucumis sativus L. HOM05D003614 ORTHO05D004156 3.5e-46 191.0 813 25.3
Carub.0006s0300 Capsella rubella HOM05D003614 ORTHO05D004156 4.6e-46 190.7 830 25.5
TWI74G0330 Tripterygium wilfordii HOM05D003614 ORTHO05D004156 4.6e-46 190.7 816 25.2
Aa31LG1G21260 Aethionema arabicum HOM05D003614 ORTHO05D004156 7.9e-46 189.9 824 24.9
CANSAT54G1064 Cannabis sativa HOM05D003614 ORTHO05D004156 1.3e-45 189.1 817 23.4
FvH4_6g25070 Fragaria vesca HOM05D003614 ORTHO05D004156 1.8e-45 188.7 808 25.1
ATR1101G023 Amborella trichopoda HOM05D003614 ORTHO05D004156 2.3e-45 188.3 219 40.6
FAN02G3060 Fragaria x ananassa HOM05D003614 ORTHO05D004156 3.0e-45 188.0 796 24.7
FAN14G1287 Fragaria x ananassa HOM05D003614 ORTHO05D004156 3.0e-45 188.0 808 25.1
FAN09G2704 Fragaria x ananassa HOM05D003614 ORTHO05D004156 3.9e-45 187.6 797 24.7
Glyma.16G222000 Glycine max HOM05D003614 ORTHO05D004156 6.7e-45 186.8 813 25.1
BcaC06g32109 Brassica carinata HOM05D003614 ORTHO05D004156 8.7e-45 186.4 801 25.0
ClCG10G005410 Citrullus lanatus HOM05D003614 ORTHO05D004156 1.1e-44 186.0 783 24.6
Glyma.16G116350 Glycine max HOM05D003614 ORTHO05D004156 1.1e-44 186.0 828 24.6
MD12G1089700 Malus domestica HOM05D003614 ORTHO05D004156 1.1e-44 186.0 794 24.7
Lsat_1_v5_gn_5_158800 Lactuca sativa HOM05D003614 ORTHO05D004156 1.9e-44 185.3 829 22.7
PGR142G0250 Punica granatum HOM05D003614 ORTHO05D004156 4.3e-44 184.1 809 25.1
Rhsim10G0199100 Rhododendron simsii HOM05D003614 ORTHO05D004156 1.3e-43 182.6 781 24.8
ATR0580G046 Amborella trichopoda HOM05D003614 ORTHO05D004156 3.7e-43 181.0 823 24.4
Dinv04144 Davidia involucrata HOM05D003614 ORTHO05D004156 4.8e-43 180.6 827 24.7
Atru.chr1.1276 Acer truncatum HOM05D003614 ORTHO05D004156 1.1e-42 179.5 648 24.8
RcHm_v2.0_Chr2g0124831 Rosa chinensis HOM05D003614 ORTHO05D004156 1.1e-42 179.5 782 24.4
THA.LOC104823214 Tarenaya hassleriana HOM05D003614 ORTHO05D004156 1.4e-42 179.1 812 25.2
Psat6g087880 Pisum sativum HOM05D003614 ORTHO05D004156 2.4e-42 178.3 811 25.0
Ah.13g076640 Amaranthus hybridus HOM05D003614 ORTHO05D004156 3.1e-42 177.9 801 24.5
COL.COLO4_33914 Corchorus olitorius HOM05D003614 ORTHO05D004156 5.3e-42 177.2 755 24.1
Sc13g0001410 Simmondsia chinensis HOM05D003614 ORTHO05D004156 5.3e-42 177.2 755 24.4
PSO017G5444 Papaver somniferum HOM05D003614 ORTHO05D004156 2.9e-40 171.4 826 23.5
SHI03570 Sapria himalayana HOM05D003614 ORTHO05D004156 5.5e-39 167.2 760 23.9
VMungo0720G1667 Vigna mungo HOM05D003614 ORTHO05D004156 5.5e-39 167.2 765 25.8
Nitab4.5_0005031g0070 Nicotiana tabacum HOM05D003614 ORTHO05D004156 9.3e-39 166.4 574 25.3
DCAR_016966 Daucus carota HOM05D003614 ORTHO05D004156 2.7e-38 164.9 650 24.3
Actinidia39178 Actinidia chinensis HOM05D003614 ORTHO05D004156 1.3e-37 162.5 813 23.4
Nitab4.5_0010525g0010 Nicotiana tabacum HOM05D003614 ORTHO05D004156 2.3e-37 161.8 575 24.9
VMungo0331G0942 Vigna mungo HOM05D003614 ORTHO05D004156 3.0e-37 161.4 783 24.3
Duzib128G0580 Durio zibethinus HOM05D003614 ORTHO05D004156 1.1e-36 159.5 640 23.8
Lj1P1115T19 Lonicera japonica HOM05D003614 ORTHO05D004156 1.1e-36 159.5 593 25.0
Lalb_Chr02g0142191 Lupinus albus HOM05D003614 ORTHO05D004156 5.7e-36 157.1 624 25.2
TPR.G13793 Trifolium pratense HOM05D003614 ORTHO05D004156 7.4e-36 156.8 736 24.2
AUR62037179 Chenopodium quinoa HOM05D003614 ORTHO05D004156 1.1e-34 152.9 756 24.3
Prupe.7G047200 Prunus persica HOM05D003614 ORTHO05D004156 4.1e-34 151.0 576 25.7
EL10Ac3g07183 Beta vulgaris HOM05D003614 ORTHO05D004156 5.8e-33 147.1 580 23.8
AT5G04050 Arabidopsis thaliana HOM05D003614 ORTHO05D004156 5.0e-32 144.1 616 24.8
Peaxi162Scf00130g01210 Petunia axillaris HOM05D003614 ORTHO05D004156 4.2e-31 141.0 522 24.9
unitig_748.g7231 Utricularia gibba HOM05D003614 ORTHO05D004156 1.3e-29 136.0 584 22.9
Cpa.g.sc42.164 Carica papaya HOM05D003614 ORTHO05D004156 2.3e-29 135.2 186 48.4
vmacro23496 Vaccinium macrocarpon HOM05D003614 ORTHO05D004156 3.0e-29 134.8 775 23.6
Zm00001eb274760 Zea mays HOM05D003614 ORTHO05D004156 3.9e-29 134.4 645 22.0
Solyc03g033520.2 Solanum lycopersicum HOM05D003614 ORTHO05D004156 4.3e-28 131.0 461 24.3
AUR62026155 Chenopodium quinoa HOM05D003614 ORTHO05D004156 5.7e-28 130.6 525 24.0
ECA233G0405 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.3e-26 124.0 114 54.4
QL07p006078 Quercus lobata HOM05D003614 ORTHO05D004156 1.4e-21 109.4 282 27.7
HanXRQChr13g0395821 Helianthus annuus HOM05D003614 ORTHO05D004156 5.1e-21 107.5 481 21.8
GSVIVG01033568001 Vitis vinifera HOM05D003614 ORTHO05D004156 3.3e-20 104.8 780 22.6
QL07p006290 Quercus lobata HOM05D003614 ORTHO05D004156 8.2e-19 100.1 271 27.7
HPP92_012753 Vanilla planifolia HOM05D003614 ORTHO05D004156 3.1e-18 98.2 485 21.2
VMungo1127G0235 Vigna mungo HOM05D003614 ORTHO05D004156 4.5e-17 94.4 336 26.8
Cpa.g.sc161.31 Carica papaya HOM05D003614 ORTHO05D004156 1.4e-15 89.4 659 20.9
QL03p003467 Quercus lobata HOM05D003614 ORTHO05D004156 1.1e-12 79.7 223 26.5
QL03p003473 Quercus lobata HOM05D003614 ORTHO05D004156 1.2e-09 69.7 142 30.3
Pp3c23_18180 Physcomitrium patens HOM05D001560 ORTHO05D003613 4.5e-09 67.8 335 20.9
QL11p043104 Quercus lobata HOM05D003614 ORTHO05D004156 2.9e-08 65.1 98 30.6
QL11p043133 Quercus lobata HOM05D003614 ORTHO05D004156 1.5e-07 62.8 242 23.6
QL03p003747 Quercus lobata HOM05D003614 ORTHO05D004156 2.1e-06 58.9 140 27.9
Rhsim10G0133200 Rhododendron simsii HOM05D003614 ORTHO05D004156 2.1e-06 58.9 76 47.4
QL03p003469 Quercus lobata HOM05D003614 ORTHO05D004156 2.7e-06 58.5 282 23.0


User provided reference genes

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