Gene: AT5G04050

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04050
  • Transcript Identifier AT5G04050.1
  • Gene Type Coding gene
  • Location Chr5 : 1096092-1097894 : positive

Gene Family Information

  • ID HOM05D003614
  • #Genes/#Species 190/85
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04050.1
  • uniprot Q9LZA5

Descriptions

  • Description RNA-directed DNA polymerase (reverse transcriptase)
  • Computational description RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3461 Blast hits to 3086 proteins in 1121 species: Archae - 3; Bacteria - 2166; Metazoa - 4; Fungi - 43; Plants - 1152; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006314
IEA
GOA Databaseintron homing
GO:0006397
IEA
Gene OntologymRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0000373
ISS
GOA DatabaseGroup II intron splicing
GO:0090615
ISS
GOA Databasemitochondrial mRNA processing
GO:0090615
IBA
Gene Ontologymitochondrial mRNA processing1
GO:0006278
IEA
GOA DatabaseRNA-dependent DNA biosynthetic process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006315
IBA
Gene Ontologyhoming of group II introns1
GO:0008380
IMP
Gene OntologyRNA splicing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003964
IEA
GOA DatabaseRNA-directed DNA polymerase activity
GO:0003964
IBA
Gene OntologyRNA-directed DNA polymerase activity1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
ISM, IBA
Gene Ontologymitochondrion1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024937 Domain X
Mapman id Description
16.11.4.2.1.3 RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.type-II splicing factor (nMAT3/4)