Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 3.1e-162 575.1 295 100.0
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 2.2e-128 462.6 266 91.0
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 4.2e-127 458.4 266 88.0
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 3.7e-123 445.3 266 86.1
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 5.9e-121 438.0 266 84.6
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 8.9e-117 424.1 272 81.6
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 1.2e-116 423.7 272 80.9
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 9.8e-116 420.6 272 80.1
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 2.2e-115 419.5 272 80.5
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 1.8e-114 416.4 272 80.5
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 1.2e-113 413.7 271 80.8
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 3.5e-113 412.1 271 80.4
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 1.2e-108 397.1 284 74.3
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 7.8e-105 384.4 275 74.2
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 3.0e-104 382.5 273 74.7
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 6.6e-104 381.3 274 74.5
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 1.1e-103 380.6 274 75.2
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 3.3e-103 379.0 275 75.6
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 7.3e-103 377.9 272 73.2
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 7.3e-103 377.9 268 74.6
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 1.2e-102 377.1 274 74.8
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 1.2e-102 377.1 273 73.3
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 8.0e-102 374.4 284 70.8
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 5.2e-101 371.7 273 72.9
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.2e-100 370.5 271 72.3
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 2.0e-100 369.8 273 73.3
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 2.6e-100 369.4 271 72.3
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 3.4e-100 369.0 270 73.7
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 4.4e-100 368.6 273 73.3
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 9.8e-100 367.5 291 67.7
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.7e-99 366.7 272 72.4
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 2.9e-99 365.9 270 73.3
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 6.4e-99 364.8 270 72.2
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 8.3e-99 364.4 273 71.8
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 1.9e-98 363.2 273 70.7
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.9e-98 363.2 273 71.8
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 3.2e-98 362.5 276 71.4
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 4.1e-98 362.1 273 71.8
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 2.7e-97 359.4 276 71.0
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 2.7e-97 359.4 268 71.3
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.5e-97 359.0 273 70.0
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.3e-96 357.1 268 70.5
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.7e-96 356.7 273 70.7
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.7e-96 356.7 280 69.6
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.7e-96 356.7 284 69.4
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.3e-96 356.3 282 68.8
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 3.0e-96 355.9 272 69.5
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 5.1e-96 355.1 256 73.8
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 6.6e-96 354.8 280 68.6
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 8.6e-96 354.4 273 70.0
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 1.5e-95 353.6 273 70.0
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.9e-95 353.2 256 72.3
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.9e-95 353.2 270 70.7
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.9e-95 353.2 270 70.7
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 1.9e-95 353.2 273 70.0
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.5e-95 352.8 270 71.1
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 2.5e-95 352.8 270 71.1
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 7.3e-95 351.3 281 68.3
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 2.1e-94 349.7 273 69.2
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 3.6e-94 349.0 273 69.2
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 3.6e-94 349.0 270 69.6
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 1.8e-93 346.7 280 66.8
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 2.3e-93 346.3 280 66.4
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 4.0e-93 345.5 280 66.4
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 6.8e-93 344.7 257 72.4
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 1.2e-92 344.0 280 66.1
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.2e-92 344.0 273 67.0
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.5e-92 343.6 284 65.1
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 2.0e-92 343.2 271 69.4
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 2.6e-92 342.8 272 66.9
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 4.4e-92 342.0 273 66.7
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 5.8e-92 341.7 272 69.5
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 7.5e-92 341.3 274 65.7
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 7.5e-92 341.3 272 67.3
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.3e-91 340.5 270 67.8
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 1.3e-91 340.5 284 64.1
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 3.7e-91 339.0 273 65.2
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 3.7e-91 339.0 285 66.3
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 8.3e-91 337.8 284 64.4
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 1.4e-90 337.0 284 64.1
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 1.9e-90 336.7 273 64.8
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.9e-90 336.7 270 66.7
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 1.9e-90 336.7 270 66.7
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 4.1e-90 335.5 270 67.4
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 7.1e-90 334.7 273 64.8
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 2.1e-89 333.2 270 67.0
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 2.1e-89 333.2 270 66.3
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 7.8e-89 331.3 271 65.7
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.0e-88 330.9 284 63.4
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.3e-88 330.5 302 62.6
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 1.3e-88 330.5 272 64.7
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.7e-88 330.1 284 63.4
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.7e-88 330.1 270 66.3
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 3.0e-88 329.3 273 64.1
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.1e-87 327.4 273 64.5
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 8.1e-86 321.2 284 62.3
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 9.9e-84 314.3 254 66.5
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 1.3e-83 313.9 292 61.6
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 1.3e-83 313.9 254 66.9
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 4.9e-83 312.0 256 68.0
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.4e-82 310.5 271 63.1
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 3.2e-82 309.3 275 59.3
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 2.1e-81 306.6 235 68.1
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 2.7e-81 306.2 275 58.9
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 2.7e-81 306.2 297 58.9
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 2.7e-81 306.2 316 57.6
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 6.6e-80 301.6 257 62.6
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.1e-79 300.8 273 60.4
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 9.6e-79 297.7 284 59.5
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.8e-78 296.2 249 66.7
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 2.8e-78 296.2 272 62.1
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 4.7e-78 295.4 285 58.6
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 8.1e-78 294.7 273 59.0
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 2.0e-76 290.0 274 62.4
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.9e-74 283.5 277 58.5
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 2.4e-74 283.1 255 62.4
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 4.2e-74 282.3 254 62.6
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 4.2e-74 282.3 276 61.2
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 3.5e-73 279.3 257 63.0
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 3.9e-72 275.8 273 55.3
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.6e-70 270.4 271 54.6
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 2.1e-70 270.0 271 55.4
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 2.9e-67 259.6 242 61.2
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 8.4e-67 258.1 267 54.7
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 1.2e-65 254.2 285 51.2
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 7.9e-65 251.5 281 52.3
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 4.5e-60 235.7 206 62.1
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 3.5e-57 226.1 276 50.7
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 4.3e-55 219.2 208 58.2
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 6.2e-54 215.3 276 47.8
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 7.9e-49 198.4 301 44.9
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.5e-44 184.1 276 40.9
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 2.5e-42 176.8 281 39.5
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 3.1e-37 159.8 153 58.8
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 2.5e-34 150.2 274 34.3
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 6.1e-33 145.6 115 64.3
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.9e-26 124.0 145 43.4
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 7.4e-23 112.1 87 65.5
Lsat_1_v5_gn_8_105180 Lactuca sativa HOM05D004035 ORTHO05D004631 5.0e-19 99.4 128 51.6
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 7.2e-18 95.5 70 64.3
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 2.1e-17 94.0 88 60.2
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 2.7e-17 93.6 153 41.2
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 2.3e-16 90.5 91 61.5
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 1.4e-13 81.3 92 52.2
SHI32097 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-11 73.2 64 60.9


User provided reference genes

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