Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13568 Trifolium pratense HOM05D004035 ORTHO05D004631 6.8e-44 180.3 90 100.0
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 6.0e-32 140.6 83 89.2
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 5.8e-27 124.0 83 75.9
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 8.3e-26 120.2 83 75.9
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.4e-25 118.6 85 72.9
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 2.1e-21 105.5 83 66.3
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.1e-20 103.2 83 63.9
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 1.1e-20 103.2 84 69.0
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 1.1e-20 103.2 83 65.1
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 1.4e-20 102.8 83 63.9
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 4.0e-20 101.3 88 59.1
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 6.8e-20 100.5 88 58.0
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 5.8e-19 97.4 95 57.9
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 7.6e-19 97.1 90 57.8
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 2.2e-18 95.5 83 61.4
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 3.8e-18 94.7 97 55.7
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 6.4e-18 94.0 100 52.0
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 1.1e-17 93.2 92 55.4
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 1.4e-17 92.8 97 54.6
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.4e-17 92.8 97 55.7
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 1.9e-17 92.4 95 54.7
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.9e-17 92.4 95 54.7
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 1.9e-17 92.4 97 53.6
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 3.2e-17 91.7 97 53.6
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 4.2e-17 91.3 100 51.0
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 7.1e-17 90.5 97 51.5
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 1.2e-16 89.7 95 51.6
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.2e-16 89.7 95 52.6
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.2e-16 89.7 92 52.2
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.6e-16 89.4 97 53.6
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 1.6e-16 89.4 97 51.5
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 2.1e-16 89.0 92 52.2
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 2.7e-16 88.6 97 53.6
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 3.5e-16 88.2 100 49.0
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 4.6e-16 87.8 87 52.9
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 4.6e-16 87.8 87 52.9
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 4.6e-16 87.8 91 56.0
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 4.6e-16 87.8 92 51.1
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 4.6e-16 87.8 92 51.1
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 4.6e-16 87.8 91 52.7
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 4.6e-16 87.8 91 52.7
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 6.0e-16 87.4 97 51.5
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 6.0e-16 87.4 85 49.4
Lalb_Chr16g0388271 Lupinus albus HOM05D004035 ORTHO05D004631 1.0e-15 86.7 87 51.7
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.3e-15 86.3 91 52.7
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 1.3e-15 86.3 91 51.6
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 1.7e-15 85.9 85 48.2
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.7e-15 85.9 91 51.6
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.3e-15 85.5 97 49.5
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 2.3e-15 85.5 85 50.6
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 2.3e-15 85.5 98 48.0
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 3.0e-15 85.1 87 54.0
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 3.0e-15 85.1 85 51.8
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 3.9e-15 84.7 90 52.2
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 3.9e-15 84.7 93 52.7
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 3.9e-15 84.7 97 51.5
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 3.9e-15 84.7 83 53.0
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 3.9e-15 84.7 107 47.7
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 5.1e-15 84.3 94 52.1
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 5.1e-15 84.3 97 47.4
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 5.1e-15 84.3 85 50.6
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 5.1e-15 84.3 97 48.5
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 5.1e-15 84.3 97 53.6
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 6.6e-15 84.0 93 48.4
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 6.6e-15 84.0 97 50.5
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 8.7e-15 83.6 104 50.0
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 8.7e-15 83.6 87 52.9
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.1e-14 83.2 95 48.4
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 1.5e-14 82.8 87 52.9
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 1.5e-14 82.8 96 49.0
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 1.5e-14 82.8 91 50.5
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 1.9e-14 82.4 97 47.4
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 2.5e-14 82.0 90 52.2
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 2.5e-14 82.0 86 51.2
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 2.5e-14 82.0 98 46.9
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 3.3e-14 81.6 90 47.8
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 4.3e-14 81.3 87 51.7
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 4.3e-14 81.3 86 51.2
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 4.3e-14 81.3 97 49.5
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 5.6e-14 80.9 91 49.5
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 5.6e-14 80.9 97 49.5
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 7.3e-14 80.5 86 51.2
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 7.3e-14 80.5 98 46.9
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 7.3e-14 80.5 92 51.1
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 9.6e-14 80.1 99 46.5
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 9.6e-14 80.1 95 48.4
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 1.2e-13 79.7 97 46.4
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 1.2e-13 79.7 95 48.4
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.6e-13 79.3 91 50.5
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.6e-13 79.3 91 50.5
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 1.6e-13 79.3 95 45.3
Cfa020838 Carpinus fangiana HOM05D004035 ORTHO05D004631 2.1e-13 79.0 95 49.5
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 2.8e-13 78.6 83 51.8
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 2.8e-13 78.6 83 51.8
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 2.8e-13 78.6 106 42.5
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 2.8e-13 78.6 99 43.4
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 3.6e-13 78.2 91 49.5
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 3.6e-13 78.2 97 46.4
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 3.6e-13 78.2 97 46.4
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 4.7e-13 77.8 94 50.0
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 6.2e-13 77.4 91 47.3
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.1e-12 76.6 99 44.4
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.4e-12 76.3 92 46.7
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 1.4e-12 76.3 92 46.7
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 2.4e-12 75.5 94 46.8
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 3.1e-12 75.1 91 48.4
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 4.0e-12 74.7 93 48.4
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.2e-11 73.2 95 44.2
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 1.2e-11 73.2 104 45.2
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 1.2e-11 73.2 104 45.2
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 1.5e-11 72.8 95 44.2
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 3.4e-11 71.6 95 43.2
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 4.4e-11 71.2 67 56.7
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 7.6e-11 70.5 97 41.2
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 2.9e-10 68.6 93 41.9
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 2.9e-10 68.6 106 37.7
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 3.8e-10 68.2 72 54.2
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 3.8e-10 68.2 100 38.0
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 2.7e-08 62.0 90 36.7
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.3e-07 59.7 95 35.8
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.7e-07 59.3 91 33.0
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 3.9e-07 58.2 109 34.9
Cfa008017 Carpinus fangiana HOM05D004035 ORTHO05D004631 2.5e-06 55.5 44 59.1
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 2.5e-06 55.5 95 40.0
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 3.3e-06 55.1 93 36.6


User provided reference genes

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