Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 0.0e+00 1635.9 809 100.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 0.0e+00 1365.1 811 83.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 0.0e+00 1272.3 820 76.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 0.0e+00 1231.5 810 76.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.4e-305 1052.7 810 65.1
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 3.4e-304 1048.1 815 64.5
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.2e-303 1045.4 814 66.0
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.4e-302 1042.7 815 64.7
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 2.4e-297 1025.4 817 63.0
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.6e-285 984.9 829 61.8
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.9e-278 962.6 826 60.9
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.1e-273 944.9 823 58.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.3e-271 939.9 830 59.5
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.0e-268 930.2 822 57.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.5e-267 926.4 825 58.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 2.0e-264 916.0 828 58.0
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.7e-264 915.6 860 55.6
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 7.7e-264 914.1 822 57.1
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.7e-263 912.9 822 56.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.9e-262 909.4 824 56.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.6e-261 906.4 825 56.4
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 6.1e-261 904.4 825 58.2
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.0e-260 903.7 823 56.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.2e-259 900.2 823 57.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 3.4e-259 898.7 839 55.9
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 4.4e-259 898.3 825 56.2
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.8e-258 895.6 808 59.4
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.1e-257 892.1 827 56.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.3e-255 885.9 824 55.5
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 8.6e-255 884.0 831 57.0
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 9.5e-254 880.6 824 56.2
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 1.4e-252 876.7 834 56.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 3.0e-252 875.5 825 55.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 5.2e-252 874.8 826 55.8
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.6e-251 872.5 831 56.4
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 3.4e-251 872.1 827 54.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 5.7e-251 871.3 824 54.4
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 9.8e-251 870.5 835 55.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 6.4e-250 867.8 825 55.4
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.1e-249 867.1 827 54.8
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.8e-249 866.3 821 53.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 7.0e-249 864.4 822 53.5
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 7.8e-248 860.9 827 55.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 3.9e-247 858.6 835 54.7
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 3.9e-247 858.6 827 55.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.6e-245 853.2 829 54.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.8e-245 852.4 827 54.3
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.8e-245 852.4 829 54.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 3.6e-245 852.0 829 53.8
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 4.0e-244 848.6 828 54.1
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.2e-243 847.0 827 54.4
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-243 846.7 829 53.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.5e-243 846.7 829 53.8
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 2.9e-242 842.4 817 54.3
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 8.3e-242 840.9 810 53.8
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 8.3e-242 840.9 809 54.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-241 840.5 829 53.6
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 4.1e-241 838.6 809 54.1
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.4e-241 838.2 832 52.0
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 7.0e-241 837.8 826 53.5
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.6e-240 836.6 826 53.6
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.9e-239 832.0 830 52.8
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 6.6e-239 831.2 828 53.1
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.5e-238 830.1 832 53.4
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.5e-238 830.1 826 53.4
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 3.3e-238 828.9 831 53.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.3e-238 828.6 825 52.2
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.1e-237 826.2 816 52.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 8.1e-237 824.3 826 53.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.2e-236 821.6 833 52.8
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 5.2e-236 821.6 827 53.0
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.9e-236 820.8 829 53.3
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.9e-236 820.8 825 52.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.5e-235 820.1 822 52.9
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.6e-235 819.3 840 53.1
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.4e-235 818.9 828 52.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 4.4e-235 818.5 839 53.2
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 7.5e-235 817.8 755 56.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.7e-234 816.6 766 56.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.9e-234 815.8 827 53.1
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 4.9e-234 815.1 804 53.0
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 6.4e-234 814.7 827 53.2
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.4e-233 813.5 722 57.3
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 3.2e-233 812.4 831 53.2
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 9.2e-233 810.8 820 53.3
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.1e-232 809.7 827 52.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-232 809.7 827 52.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.7e-232 809.3 823 52.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.6e-232 808.5 831 52.7
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-231 807.4 829 52.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.9e-231 805.4 825 52.4
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 5.1e-231 805.1 825 52.5
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 6.6e-231 804.7 828 52.1
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 8.6e-231 804.3 827 52.5
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.3e-230 802.0 820 52.0
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.6e-230 801.6 704 58.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 7.3e-230 801.2 828 52.1
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.8e-229 799.3 837 52.1
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.1e-229 797.7 862 50.2
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.4e-228 797.0 827 51.9
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-228 796.6 824 50.8
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.4e-228 796.2 810 52.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 3.1e-228 795.8 817 51.8
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.2e-228 795.0 824 51.8
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 5.2e-228 795.0 769 54.1
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.9e-228 794.3 869 51.6
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.6e-227 792.7 824 51.3
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 5.8e-227 791.6 881 49.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.9e-226 789.3 839 51.8
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.1e-225 787.3 828 50.8
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.2e-225 785.8 731 54.6
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 9.2e-225 784.3 847 50.9
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-224 783.9 817 51.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.0e-223 780.8 808 51.6
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.1e-222 777.3 824 51.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.9e-222 776.5 820 51.2
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 3.3e-222 775.8 818 50.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 5.6e-222 775.0 817 50.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.2e-221 773.9 841 51.2
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.1e-221 773.1 814 53.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 2.8e-221 772.7 823 52.0
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 3.6e-221 772.3 818 50.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.1e-220 769.2 809 50.9
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.0e-220 768.8 804 51.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-219 767.3 802 51.4
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.4e-219 765.8 764 52.7
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 3.8e-218 762.3 818 50.1
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.1e-217 760.8 868 49.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.5e-216 755.7 826 47.7
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.9e-215 752.3 832 50.2
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.6e-214 748.4 762 52.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 6.2e-213 745.0 832 49.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-211 740.7 804 49.5
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.8e-210 735.7 734 54.1
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.6e-208 730.3 838 49.6
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.3e-207 726.5 837 50.1
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 2.5e-206 723.0 833 48.5
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.3e-206 722.2 628 58.4
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 8.4e-202 708.0 830 46.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.1e-198 697.6 837 47.7
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.1e-197 693.3 834 48.4
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.9e-186 656.4 711 53.0
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 3.9e-183 646.0 708 49.0
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.6e-147 527.7 587 52.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 4.2e-145 519.6 890 35.2
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.6e-138 495.7 905 34.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.6e-137 492.7 853 34.8
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.0e-135 488.4 423 57.2
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.9e-129 467.6 914 34.2
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 2.6e-126 457.2 897 35.1
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.0e-110 404.4 416 54.3
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.8e-103 381.3 463 48.6
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.7e-98 364.8 491 41.5
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 3.1e-95 354.0 640 36.1
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 3.4e-86 323.9 321 54.8
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.9e-81 308.1 301 54.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.2e-78 298.9 249 58.6
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.8e-69 267.3 319 45.5
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 7.9e-67 259.6 257 54.5
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.1e-63 247.3 685 29.2
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 6.9e-63 246.5 220 54.5
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 3.8e-61 240.7 918 24.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 8.5e-61 239.6 260 49.6
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.8e-40 170.6 304 39.5
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 8.3e-40 169.9 159 58.5
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.2e-37 161.8 100 76.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.6e-35 155.6 189 44.4
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-33 148.7 104 65.4
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 3.7e-32 144.4 417 29.0
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-31 142.9 102 63.7
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.4e-31 142.5 453 27.6
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.0e-31 140.2 123 63.4
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 7.0e-31 140.2 204 42.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.9e-29 134.8 203 40.4
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.1e-28 132.9 100 61.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 9.5e-28 129.8 200 44.0
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.8e-26 125.6 641 24.2
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 2.1e-19 102.1 87 55.2
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.3e-12 78.2 105 37.1
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.5e-12 76.6 105 36.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.6e-11 75.9 105 36.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.2e-10 70.9 105 34.3
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.2e-07 61.6 104 34.6
Psat6g134640 Pisum sativum HOM05D001175 ORTHO05D002146 1.2e-06 59.7 64 48.4
Lalb_Chr07g0188201 Lupinus albus HOM05D001715 ORTHO05D003849 2.1e-06 58.9 310 24.5
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 6.0e-06 57.4 150 30.0


User provided reference genes

Program Settings