Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 3.0e-78 295.0 145 100.0
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 3.2e-67 258.5 134 92.5
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 1.6e-66 256.1 134 91.8
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.5e-64 249.6 134 88.1
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.5e-64 249.6 134 88.1
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 4.7e-63 244.6 130 88.5
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 8.9e-62 240.4 130 86.9
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 2.0e-61 239.2 130 86.2
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 3.4e-61 238.4 130 86.2
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 4.4e-61 238.0 130 86.2
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 9.9e-61 236.9 130 84.6
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 9.9e-61 236.9 130 83.1
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 6.4e-60 234.2 130 83.1
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 2.4e-59 232.3 130 82.3
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 3.2e-59 231.9 134 80.6
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 4.1e-59 231.5 134 79.9
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.1e-59 231.5 130 83.1
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 4.1e-59 231.5 130 83.1
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 1.2e-58 229.9 134 79.9
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.6e-58 229.6 130 82.3
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 1.6e-58 229.6 130 80.0
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 1.6e-58 229.6 130 80.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.6e-58 229.6 130 82.3
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 2.1e-58 229.2 131 80.9
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.1e-58 229.2 130 83.1
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.7e-58 228.8 130 82.3
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.7e-58 228.8 130 82.3
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 3.5e-58 228.4 130 80.8
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 4.6e-58 228.0 134 78.4
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 6.0e-58 227.6 130 80.0
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 6.0e-58 227.6 130 80.0
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 7.8e-58 227.3 130 80.0
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.8e-58 227.3 130 80.0
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.8e-58 227.3 130 80.0
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.0e-57 226.9 130 80.0
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.0e-57 226.9 130 80.0
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.0e-57 226.9 129 81.4
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.3e-57 226.5 129 81.4
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.3e-57 226.5 130 81.5
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.7e-57 226.1 130 80.0
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 3.0e-57 225.3 130 79.2
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 3.0e-57 225.3 130 80.8
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 5.1e-57 224.6 131 79.4
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 5.1e-57 224.6 129 82.2
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 6.6e-57 224.2 129 79.8
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 6.6e-57 224.2 133 78.2
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 8.6e-57 223.8 132 79.5
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 8.6e-57 223.8 130 81.5
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 8.6e-57 223.8 131 79.4
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 1.1e-56 223.4 130 78.5
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 1.5e-56 223.0 130 80.0
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 1.5e-56 223.0 130 80.8
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.5e-56 223.0 130 80.8
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.9e-56 222.6 130 80.0
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 1.9e-56 222.6 134 76.9
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.5e-56 222.2 130 79.2
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 2.5e-56 222.2 130 80.0
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 2.5e-56 222.2 130 80.8
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 3.3e-56 221.9 129 78.3
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 3.3e-56 221.9 129 79.8
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 3.3e-56 221.9 130 80.0
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 3.3e-56 221.9 129 79.8
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 3.3e-56 221.9 130 78.5
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 5.6e-56 221.1 130 79.2
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 5.6e-56 221.1 129 80.6
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 7.3e-56 220.7 129 79.1
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 7.3e-56 220.7 129 79.1
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 9.5e-56 220.3 130 77.7
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 9.5e-56 220.3 131 78.6
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 9.5e-56 220.3 128 80.5
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.2e-55 219.9 130 80.0
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.2e-55 219.9 130 80.0
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 1.6e-55 219.5 131 78.6
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 1.6e-55 219.5 130 78.5
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.6e-55 219.5 130 79.2
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 2.1e-55 219.2 131 78.6
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.8e-55 218.8 130 78.5
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.8e-55 218.8 130 78.5
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 6.2e-55 217.6 129 78.3
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 6.2e-55 217.6 134 76.1
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 6.2e-55 217.6 134 76.1
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 6.2e-55 217.6 130 77.7
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 6.2e-55 217.6 130 78.5
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 6.2e-55 217.6 130 78.5
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 8.1e-55 217.2 129 78.3
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 8.1e-55 217.2 129 78.3
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 8.1e-55 217.2 129 78.3
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 8.1e-55 217.2 129 76.7
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.1e-55 217.2 129 76.7
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.1e-54 216.9 129 76.0
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.1e-54 216.9 130 77.7
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 1.4e-54 216.5 128 78.9
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.4e-54 216.5 134 74.6
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 1.8e-54 216.1 129 79.1
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 3.1e-54 215.3 131 77.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.1e-54 215.3 130 75.4
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 4.0e-54 214.9 134 74.6
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 4.0e-54 214.9 129 76.7
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 5.2e-54 214.5 134 74.6
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.2e-54 214.5 121 81.8
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 5.2e-54 214.5 132 77.3
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 6.8e-54 214.2 130 77.7
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 1.5e-53 213.0 130 75.4
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.4e-53 211.8 134 73.9
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 3.4e-53 211.8 131 77.9
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 4.4e-53 211.5 129 75.2
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 4.4e-53 211.5 131 77.9
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 9.9e-53 210.3 134 74.6
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.3e-52 209.9 130 76.2
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 1.7e-52 209.5 130 75.4
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 2.9e-52 208.8 136 74.3
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 2.9e-52 208.8 130 73.1
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 6.4e-52 207.6 131 76.3
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 1.9e-51 206.1 130 75.4
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 1.9e-51 206.1 129 75.2
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 4.1e-51 204.9 130 73.1
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 7.1e-51 204.1 130 72.3
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 9.2e-51 203.8 133 72.9
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 1.2e-50 203.4 129 76.0
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 2.1e-50 202.6 130 73.1
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 4.6e-50 201.4 130 73.1
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.3e-49 199.9 130 71.5
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.3e-49 199.1 130 71.5
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 3.0e-49 198.7 130 70.8
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 3.9e-49 198.4 130 71.5
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 5.1e-49 198.0 130 70.8
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 6.6e-49 197.6 130 70.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 8.7e-49 197.2 130 69.2
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 5.6e-48 194.5 130 69.2
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 4.7e-47 191.4 129 70.5
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 4.0e-46 188.3 130 67.7
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 9.0e-46 187.2 130 65.4
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 2.6e-45 185.7 130 64.6
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.6e-45 185.7 130 64.6
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 4.9e-44 181.4 130 64.6
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 1.4e-43 179.9 130 61.5
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 1.3e-41 173.3 130 61.5
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 1.7e-41 172.9 129 66.7
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 8.7e-41 170.6 131 61.8
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 4.5e-37 158.3 128 60.9
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 2.6e-29 132.5 134 47.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 1.3e-23 113.6 66 75.8
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.4e-22 110.2 117 42.7
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 6.0e-18 94.7 135 38.5
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.9e-12 75.9 51 70.6


User provided reference genes

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