Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.9e-181 639.0 324 100.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.0e-147 525.0 331 83.1
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 7.7e-138 494.2 326 77.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.9e-136 489.6 296 80.7
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 6.1e-135 484.6 300 79.3
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.8e-134 483.0 298 79.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-130 470.3 299 76.9
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-130 469.2 300 76.3
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.4e-130 468.8 251 89.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.1e-120 437.2 265 84.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.3e-116 423.7 250 82.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 3.1e-115 419.1 293 68.6
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 5.0e-113 411.8 280 70.0
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 6.5e-113 411.4 292 66.8
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.9e-112 409.8 280 69.6
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.2e-112 408.7 293 66.6
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.2e-111 407.1 293 66.6
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.7e-111 406.0 293 65.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.8e-110 403.3 293 67.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.8e-110 403.3 298 65.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 3.0e-110 402.5 282 67.4
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 4.0e-110 402.1 283 67.8
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.0e-110 402.1 280 68.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.0e-109 399.8 285 66.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.6e-109 399.4 295 65.8
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.6e-109 399.4 282 67.7
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.4e-109 399.1 281 68.0
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.2e-108 396.4 282 66.7
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.3e-108 394.8 279 67.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 6.3e-108 394.8 281 66.9
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.4e-107 392.9 298 63.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.1e-107 392.5 294 69.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 4.1e-107 392.1 281 66.9
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 7.0e-107 391.3 296 62.8
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.2e-106 390.6 300 64.0
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-106 390.6 280 66.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 7.7e-106 387.9 282 66.7
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.0e-105 387.5 281 65.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.7e-105 386.7 278 65.1
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 8.5e-105 384.4 281 65.8
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 8.5e-105 384.4 281 65.8
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 8.5e-105 384.4 281 65.8
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.9e-104 383.3 293 63.8
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.5e-104 382.9 288 62.8
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.5e-104 381.7 280 63.9
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 2.7e-103 379.4 283 63.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.1e-103 378.3 281 64.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.0e-102 375.9 295 62.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 4.4e-101 372.1 325 58.2
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 4.4e-101 372.1 283 62.2
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 7.5e-101 371.3 305 58.7
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 7.5e-101 371.3 295 61.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 9.8e-101 370.9 296 60.8
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 9.8e-101 370.9 282 61.7
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.4e-99 366.3 282 61.7
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 9.1e-99 364.4 280 61.1
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.0e-98 363.2 283 60.8
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 4.5e-98 362.1 283 58.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.9e-98 361.7 244 70.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-97 360.5 293 60.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.9e-97 359.4 246 68.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.6e-95 353.6 295 60.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 3.6e-95 352.4 282 59.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.1e-95 351.7 282 58.5
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 6.1e-95 351.7 282 59.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.1e-95 351.7 256 65.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 8.0e-95 351.3 302 56.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 8.0e-95 351.3 282 58.9
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 8.0e-95 351.3 282 58.5
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.0e-94 350.9 282 59.6
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.0e-94 350.9 301 55.8
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-94 349.7 282 59.2
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 5.2e-94 348.6 282 58.9
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.2e-93 347.4 282 57.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.0e-93 346.7 282 58.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.0e-93 346.7 247 67.6
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 2.6e-93 346.3 280 59.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 5.7e-93 345.1 282 57.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 9.8e-93 344.4 250 64.0
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.2e-92 343.2 282 57.8
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 4.5e-90 335.5 299 56.2
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 5.9e-90 335.1 256 62.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 2.5e-88 329.7 281 58.0
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 4.3e-88 328.9 218 69.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 5.6e-88 328.6 258 60.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.1e-87 325.1 257 59.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.0e-86 324.3 258 59.7
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.2e-86 322.0 279 55.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.9e-83 313.5 280 56.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.4e-83 313.2 280 56.8
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.0e-81 307.8 219 66.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.6e-79 299.3 282 52.1
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.2e-78 295.4 279 53.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 8.9e-78 294.7 246 64.6
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-75 287.7 293 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.0e-73 279.6 278 47.8
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.5e-72 276.6 195 64.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.3e-72 276.2 285 51.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.3e-72 275.0 188 67.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.4e-70 270.8 278 46.0
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.2e-68 263.5 559 32.7
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.9e-68 262.3 186 64.0
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.8e-66 255.0 296 46.6
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.1e-64 251.1 279 44.4
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 4.3e-64 249.2 298 41.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.1e-62 243.0 147 76.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.0e-61 240.4 162 68.5
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 5.1e-57 225.7 152 67.1
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-55 221.1 149 67.1
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.6e-50 202.6 157 64.3
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.0e-46 189.5 240 46.2
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.0e-46 188.3 240 46.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.4e-45 186.4 175 53.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-43 180.6 150 61.3
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.7e-42 176.8 150 60.0
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.7e-39 166.4 127 57.5
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 9.0e-38 161.8 216 33.8
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-37 160.2 228 43.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.0e-36 158.3 200 44.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.5e-35 153.7 102 73.5
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-34 151.0 127 59.1
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-34 149.4 100 72.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 7.9e-34 148.7 275 33.8
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 4.3e-32 142.9 127 57.5
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.7e-31 139.8 113 57.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.0e-28 131.7 109 60.6
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.7e-21 105.5 74 64.9
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 3.8e-20 103.2 79 69.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.4e-17 94.7 75 57.3
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.8e-14 84.3 75 61.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.7e-13 79.0 63 63.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.2e-11 73.2 82 48.8
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.3e-09 67.4 75 50.7
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.0e-06 55.8 84 40.5
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 7.0e-06 55.8 95 37.9


User provided reference genes

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