Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 9.8e-98 360.1 184 100.0
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.5e-79 298.5 194 83.5
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.7e-73 278.5 184 79.9
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 6.6e-70 267.7 193 78.8
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.5e-66 256.5 193 74.6
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.9e-64 249.6 193 72.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.2e-64 248.8 192 71.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.3e-62 243.4 180 70.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.3e-62 242.7 191 71.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.9e-62 241.9 194 70.6
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.9e-62 241.9 194 70.6
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 5.1e-62 241.5 183 71.6
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 5.1e-62 241.5 179 73.2
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 8.7e-62 240.7 184 70.1
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.5e-61 240.0 149 84.6
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.5e-61 240.0 192 69.8
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.9e-61 239.6 195 68.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.5e-61 239.2 185 67.6
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.5e-61 239.2 192 68.8
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 3.3e-61 238.8 183 71.6
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 4.3e-61 238.4 185 73.5
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 5.6e-61 238.0 183 69.4
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 5.6e-61 238.0 182 72.0
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 9.6e-61 237.3 147 84.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.3e-60 236.9 184 67.4
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.6e-60 236.5 189 69.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.6e-60 236.5 180 70.6
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.8e-60 235.7 144 84.7
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.8e-60 235.7 192 68.8
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.8e-60 235.7 182 71.4
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 6.2e-60 234.6 176 73.3
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.2e-60 234.6 175 74.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.1e-59 233.8 147 83.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.1e-59 233.8 183 70.5
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.4e-59 233.4 183 68.9
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.4e-59 232.6 183 70.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.1e-59 232.3 169 74.6
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.1e-59 232.3 174 73.0
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.1e-59 232.3 190 68.9
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.3e-59 231.5 169 74.6
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 5.3e-59 231.5 179 68.7
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 5.3e-59 231.5 186 69.9
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.9e-59 231.1 183 69.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.9e-59 231.1 184 67.9
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.9e-59 231.1 184 67.9
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.9e-59 231.1 180 70.0
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.0e-59 230.7 189 67.7
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 9.0e-59 230.7 183 68.9
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.0e-59 230.7 183 68.9
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.0e-59 230.7 183 68.9
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.6e-58 229.2 176 69.9
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.6e-58 229.2 182 69.2
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.6e-58 229.2 142 83.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.6e-58 229.2 145 81.4
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.6e-58 229.2 169 74.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 5.8e-58 228.0 160 76.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 9.9e-58 227.3 184 67.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 9.9e-58 227.3 188 64.4
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.3e-57 226.9 165 71.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.9e-57 225.7 125 90.4
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.8e-57 225.3 181 68.5
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.8e-57 225.3 147 79.6
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.8e-57 225.3 181 68.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 6.4e-57 224.6 183 68.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 6.4e-57 224.6 182 68.1
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 8.4e-57 224.2 188 66.5
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 8.4e-57 224.2 181 67.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.1e-56 223.8 190 65.3
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.4e-56 223.4 191 63.4
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.4e-56 222.6 139 80.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.4e-56 222.6 139 80.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.2e-56 222.2 142 78.9
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 7.1e-56 221.1 175 68.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 7.1e-56 221.1 188 62.2
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 9.3e-56 220.7 174 69.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.2e-55 220.3 161 71.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.2e-55 220.3 159 75.5
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.2e-55 220.3 152 78.9
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.2e-55 220.3 182 68.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-55 219.5 158 74.7
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-55 219.5 158 74.7
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.1e-55 219.5 158 74.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.7e-55 219.2 158 74.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.5e-55 218.8 154 76.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 3.5e-55 218.8 158 74.7
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.5e-55 218.8 192 64.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.9e-55 217.6 181 64.6
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 7.9e-55 217.6 137 82.5
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 7.9e-55 217.6 158 74.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 7.9e-55 217.6 124 85.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 7.9e-55 217.6 125 88.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-54 217.2 158 74.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.3e-54 216.9 158 72.2
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.3e-54 216.9 183 66.1
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.3e-54 216.9 142 76.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-54 216.5 155 75.5
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.7e-54 216.5 189 63.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.7e-54 216.5 178 65.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.7e-54 216.5 154 74.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.3e-54 216.1 158 72.8
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 3.0e-54 215.7 158 72.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.0e-54 215.7 154 75.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.0e-54 215.7 154 75.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.0e-54 215.7 160 72.5
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 5.1e-54 214.9 158 73.4
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 5.1e-54 214.9 158 73.4
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 5.1e-54 214.9 198 61.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 6.6e-54 214.5 125 85.6
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 6.6e-54 214.5 155 73.5
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.9e-53 213.0 135 79.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.5e-53 212.6 169 68.6
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.3e-53 212.2 124 83.9
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 3.3e-53 212.2 124 83.9
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 7.3e-53 211.1 170 68.2
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.6e-52 209.9 166 69.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 4.8e-52 208.4 161 69.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.1e-51 207.2 200 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.0e-51 205.3 153 69.9
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 5.3e-51 204.9 207 56.5
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 5.3e-51 204.9 138 75.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 6.9e-51 204.5 206 59.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.5e-50 203.4 146 76.0
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.3e-49 200.3 124 78.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.2e-49 199.5 154 68.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.2e-49 199.5 175 60.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-48 197.2 132 76.5
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.9e-48 196.4 179 58.7
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.1e-48 194.5 152 70.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-47 193.7 158 63.9
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.6e-47 193.4 162 66.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-47 193.0 152 69.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.7e-47 192.6 152 69.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 3.5e-47 192.2 174 60.9
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 7.9e-47 191.0 153 69.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 6.7e-46 188.0 142 73.2
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.1e-43 179.1 153 64.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.9e-43 177.9 182 56.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.5e-42 176.8 153 67.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.8e-41 172.2 155 61.3
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.8e-41 172.2 145 66.2
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-40 170.2 145 65.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 3.2e-40 169.1 150 62.7
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 9.3e-40 167.5 148 62.2
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.2e-39 167.2 125 67.2
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 6.0e-39 164.9 158 60.8
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.9e-38 162.2 145 65.5
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.7e-38 161.4 148 58.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 6.7e-38 161.4 184 54.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-36 156.4 146 58.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.2e-36 154.8 124 61.3
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 9.0e-35 151.0 125 60.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 9.3e-32 141.0 126 57.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.6e-31 138.7 92 71.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.7e-30 134.4 141 53.2
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 4.3e-29 132.1 77 83.1
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 7.4e-29 131.3 97 71.1
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.1e-27 125.6 93 63.4
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.3e-27 125.2 144 54.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.4e-26 122.5 104 65.4
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.7e-26 121.3 69 88.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 8.5e-25 117.9 68 88.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.2e-24 115.9 68 86.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.2e-24 115.5 121 54.5
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-21 106.7 111 55.0
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.9e-18 95.1 69 69.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.2e-16 89.4 53 77.4
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 3.2e-16 89.4 59 72.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 4.2e-16 89.0 56 73.2
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 7.2e-16 88.2 59 71.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-15 87.4 47 89.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.0e-14 84.3 124 38.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-13 80.5 81 58.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.6e-13 79.7 81 58.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 8.0e-07 58.2 60 53.3
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.4e-06 57.4 31 90.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.8e-06 57.0 54 51.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.0e-06 56.2 37 70.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.0e-06 56.2 54 51.9


User provided reference genes

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