Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 0.0e+00 1172.5 656 100.0
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 0.0e+00 1094.0 656 91.2
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 0.0e+00 1075.5 657 89.6
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.4e-303 1045.0 659 89.7
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.4e-292 1008.4 657 84.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.6e-291 1005.7 657 83.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 9.3e-284 979.9 658 82.5
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.3e-282 975.3 658 82.4
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.1e-271 938.3 659 82.2
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 7.9e-267 923.7 658 79.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.8e-247 859.4 660 75.8
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 5.3e-247 857.8 661 76.2
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.6e-246 855.5 663 72.7
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.9e-244 849.4 663 70.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.8e-242 842.8 663 74.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.1e-239 832.0 658 71.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 8.5e-237 823.9 659 70.9
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-236 823.5 662 71.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.1e-235 819.3 663 72.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.5e-233 813.1 663 72.5
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.0e-233 812.8 663 72.1
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.7e-233 811.2 663 72.4
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 9.8e-233 810.4 662 72.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.4e-231 806.6 663 70.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.4e-231 806.6 665 71.0
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.5e-230 802.0 662 72.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.5e-230 801.6 665 71.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.9e-230 801.2 663 70.1
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-229 800.4 663 70.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.3e-229 800.0 660 72.1
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.3e-229 800.0 660 72.1
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.1e-228 797.0 666 70.6
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 4.0e-226 788.5 663 70.9
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.2e-226 788.1 663 69.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 6.8e-226 787.7 667 69.1
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 7.5e-225 784.3 662 68.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 9.8e-225 783.9 664 71.1
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-224 783.1 663 68.9
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-223 780.4 663 68.6
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-222 776.2 663 68.5
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.1e-219 766.1 662 66.0
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.8e-218 763.1 666 66.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-217 760.0 663 67.7
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 4.4e-217 758.4 660 68.6
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 7.8e-214 747.7 668 66.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.0e-213 745.0 638 69.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 7.3e-212 741.1 671 63.9
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 9.5e-212 740.7 678 68.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-210 737.3 662 66.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.3e-210 736.1 660 64.7
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 5.2e-210 734.9 661 66.3
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 5.2e-210 734.9 660 65.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 3.7e-208 728.8 661 64.0
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 6.4e-208 728.0 663 68.6
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.4e-207 724.9 664 65.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 7.8e-206 721.1 662 64.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.3e-204 715.7 660 64.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.3e-204 715.3 544 75.2
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.3e-204 715.3 544 75.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.2e-203 713.8 660 64.8
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 9.9e-201 704.1 660 64.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-200 703.7 661 67.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 8.3e-200 701.0 668 62.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.1e-199 700.7 660 64.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 7.8e-198 694.5 669 62.5
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.7e-197 693.3 660 63.8
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.9e-197 692.2 663 64.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.5e-196 689.5 658 63.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 9.5e-196 687.6 657 61.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.2e-195 687.2 658 63.5
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.8e-195 686.0 662 66.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.6e-195 685.6 663 63.8
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.6e-195 685.6 673 64.0
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 6.2e-195 684.9 655 61.8
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.8e-194 683.3 660 61.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 3.4e-193 679.1 664 62.7
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 5.8e-193 678.3 659 62.8
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.8e-193 678.3 673 63.4
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.8e-192 675.6 661 60.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.1e-191 674.1 660 63.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.9e-191 673.3 661 63.8
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.1e-191 671.4 658 62.3
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.2e-190 670.6 660 61.5
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-190 670.2 666 61.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.7e-189 666.8 663 59.4
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 8.7e-189 664.5 665 62.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.5e-188 663.7 669 61.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-188 663.3 663 60.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 7.3e-188 661.4 612 61.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.2e-187 660.6 659 61.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-187 660.2 663 59.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-187 659.4 659 60.8
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 4.7e-187 658.7 662 60.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-186 657.5 609 65.7
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.1e-186 657.5 667 60.6
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.4e-186 656.4 658 60.6
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.1e-186 656.0 658 60.5
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.0e-186 655.6 663 58.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 9.0e-186 654.4 667 58.5
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 4.4e-185 652.1 663 59.9
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 4.4e-185 652.1 663 59.9
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 9.9e-185 651.0 665 60.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-183 647.5 669 60.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-183 647.1 663 57.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.6e-182 643.7 658 59.3
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 2.1e-182 643.3 680 55.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.6e-182 642.1 660 57.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-181 640.2 687 58.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.1e-179 633.3 661 59.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.1e-179 633.3 661 59.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.4e-178 630.6 665 56.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 3.1e-178 629.4 669 59.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 4.0e-178 629.0 658 58.8
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.9e-178 628.2 661 61.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 6.9e-178 628.2 658 57.8
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 9.0e-178 627.9 660 58.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.3e-175 617.8 662 56.5
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 4.6e-174 615.5 663 56.4
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 6.0e-174 615.1 543 66.1
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-172 610.1 659 57.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.5e-172 609.8 398 84.7
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.8e-171 605.5 668 57.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.1e-170 604.4 663 61.1
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.6e-169 598.2 684 56.3
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.4e-168 595.1 652 56.0
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 6.0e-166 588.6 662 55.1
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 7.9e-166 588.2 666 56.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.6e-164 582.0 664 53.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 3.7e-163 579.3 670 53.6
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.2e-163 578.2 670 52.1
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.7e-160 570.5 652 57.2
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.2e-160 570.1 659 54.6
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 3.9e-157 559.3 675 51.3
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.5e-156 556.6 661 54.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.3e-155 552.0 660 52.7
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 5.0e-152 542.3 679 50.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-147 527.7 680 51.2
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-147 526.6 637 52.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.0e-144 518.1 680 49.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-144 516.5 683 50.5
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.8e-144 516.2 662 48.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 4.2e-143 512.7 671 51.0
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.2e-142 511.1 626 51.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.6e-142 509.6 672 50.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.6e-140 503.4 676 50.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 7.2e-135 485.3 667 49.9
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.7e-134 482.6 663 49.8
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 8.2e-131 471.9 543 56.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 8.5e-128 461.8 404 71.0
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-127 461.5 409 68.5
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.7e-118 430.3 622 45.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 8.8e-117 425.2 667 43.5
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 3.4e-116 423.3 430 60.7
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.7e-115 421.0 677 45.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 3.5e-105 386.7 663 44.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-90 338.2 678 40.3
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 5.2e-85 319.7 555 42.5
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.1e-80 303.1 651 39.8
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.1e-78 297.7 311 57.2
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 8.9e-77 292.4 542 41.7
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.7e-72 278.1 233 67.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.2e-68 265.4 433 43.4
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.9e-58 231.5 627 33.7
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.1e-46 191.4 273 41.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.7e-41 174.5 221 51.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.9e-36 156.8 106 72.6
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.3e-27 129.0 126 62.7
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 8.5e-27 126.3 77 80.5
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 6.1e-25 120.2 151 52.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-24 119.0 109 54.1
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.1e-21 107.8 135 40.7
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 7.0e-21 106.7 88 62.5
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 3.2e-18 97.8 140 52.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 9.4e-18 96.3 61 73.8
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.0e-16 91.3 74 62.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.2e-16 90.5 75 68.0
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 7.7e-12 76.6 60 63.3
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.3e-11 75.9 468 25.2
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.8e-08 65.5 311 27.0


User provided reference genes

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