Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 4.7e-116 421.4 243 100.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 5.8e-106 387.9 243 92.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.7e-105 386.3 243 93.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.9e-105 385.6 243 93.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.9e-101 372.9 243 88.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.3e-101 371.7 244 88.9
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.6e-100 369.8 243 88.1
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.4e-98 362.1 245 78.0
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 4.9e-97 358.2 242 86.8
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.4e-96 354.8 237 77.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.3e-96 354.0 236 77.5
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.7e-95 352.4 241 83.4
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.8e-95 350.9 241 81.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.3e-94 349.4 241 83.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 3.0e-94 349.0 241 74.3
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 5.1e-94 348.2 241 80.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-93 347.1 239 84.9
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.1e-93 347.1 239 84.9
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-93 346.7 239 84.9
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.5e-93 346.7 241 82.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.9e-93 346.3 241 80.1
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 9.6e-93 344.0 241 81.7
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.1e-92 342.8 241 81.7
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.8e-92 342.4 236 83.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 80.5
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 4.8e-92 341.7 235 84.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 76.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.1e-91 340.5 241 80.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 80.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.8e-91 339.7 209 85.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.4e-91 339.3 206 83.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 73.1
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.9e-91 337.8 241 80.5
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.9e-91 337.8 241 74.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.0e-91 337.4 241 78.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.2e-90 337.0 242 77.3
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.2e-90 337.0 241 80.9
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-90 337.0 242 76.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.6e-90 335.9 236 80.1
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.6e-90 335.9 241 78.8
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.5e-90 335.1 241 72.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 4.5e-90 335.1 238 74.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.3e-89 333.6 238 73.9
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.7e-89 333.2 238 73.9
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.7e-89 333.2 227 81.5
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.9e-89 332.4 238 78.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.8e-89 332.0 206 80.1
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.8e-89 332.0 243 74.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 73.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 8.4e-89 330.9 242 75.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.1e-88 330.5 242 75.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.2e-88 328.9 241 78.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.2e-88 328.6 238 79.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 72.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 71.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 74.8
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.3e-88 327.4 242 71.9
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 71.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.7e-87 325.9 236 78.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.7e-87 325.9 236 80.1
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.5e-87 325.5 241 78.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.9e-87 324.3 241 69.7
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.9e-87 324.3 242 71.9
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.0e-86 323.9 227 81.5
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.1e-86 321.6 235 73.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.7e-86 320.9 238 77.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.1e-85 320.5 236 68.6
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 237 74.3
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 238 76.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.3e-85 318.9 244 76.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.3e-85 318.5 203 79.3
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.6e-85 317.4 242 71.9
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.3e-84 317.0 202 80.2
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.6e-84 316.6 239 72.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.1e-84 316.2 240 71.2
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 237 74.3
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.1e-84 316.2 202 79.7
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.8e-84 315.8 241 76.3
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.7e-84 315.5 196 80.6
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.7e-84 315.5 245 66.9
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 6.2e-84 314.7 238 75.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.1e-84 314.3 191 83.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.1e-83 313.9 246 69.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.8e-83 313.2 236 77.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.8e-83 313.2 201 78.1
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.8e-83 313.2 241 74.3
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 237 73.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.2e-82 310.5 209 84.7
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 3.4e-82 308.9 195 79.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 203 76.8
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 9.9e-82 307.4 238 73.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 9.9e-82 307.4 242 71.5
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.2e-81 306.2 238 66.8
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.8e-81 305.4 241 73.9
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 4.9e-81 305.1 199 78.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.1e-80 303.9 229 69.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.2e-80 302.4 201 78.6
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.5e-80 301.6 201 78.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.1e-80 301.2 240 66.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.2e-79 300.4 229 72.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 240 66.7
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.7e-79 299.3 240 66.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.7e-79 299.3 240 67.1
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.5e-79 298.9 236 65.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 7.9e-79 297.7 236 65.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.0e-78 297.4 242 70.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.3e-78 296.2 204 75.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.0e-78 295.8 236 66.5
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.7e-78 294.3 240 65.4
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 8.7e-78 294.3 192 76.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.5e-77 293.5 240 65.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 5.6e-77 291.6 242 69.4
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 8.2e-76 287.7 238 71.0
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.4e-75 286.2 205 72.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.4e-75 286.2 205 72.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.2e-74 283.9 205 72.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.2e-74 283.9 205 72.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.0e-74 283.1 183 76.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.2e-73 279.6 243 65.4
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 5.5e-72 275.0 206 66.5
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.9e-69 266.5 178 74.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 9.7e-69 264.2 238 57.1
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 6.3e-68 261.5 227 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.4e-66 255.8 192 68.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 5.7e-61 238.4 192 62.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.7e-60 235.7 151 79.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 3.8e-57 225.7 191 63.4
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-55 220.7 206 61.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.9e-55 218.0 205 58.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-49 200.7 169 65.7
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.6e-47 192.6 133 73.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.4e-43 179.9 111 79.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.5e-42 176.0 105 84.8
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-40 171.0 206 52.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 8.8e-38 161.4 176 48.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 7.0e-35 151.8 173 45.7
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.7e-28 129.4 129 56.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.1e-27 126.3 185 38.4
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 7.0e-27 125.2 86 68.6
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.2e-19 99.8 90 73.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.0e-18 97.1 180 34.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.2e-15 87.8 54 79.6
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-13 80.9 56 71.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.3e-12 75.1 178 29.8
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.8e-07 60.1 81 45.7


User provided reference genes

Program Settings