Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.4e-244 848.6 491 100.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 6.9e-191 671.0 431 86.5
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 5.5e-180 634.8 433 81.8
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.3e-177 625.5 419 84.5
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.2e-168 596.3 493 74.8
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 6.3e-168 594.7 479 74.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.1e-167 592.4 493 75.7
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 3.4e-161 572.4 411 83.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.7e-160 570.1 527 69.6
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 3.5e-158 562.4 508 70.7
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 5.5e-156 555.1 500 73.4
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.3e-154 549.7 500 69.6
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 7.0e-151 538.1 505 67.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.6e-150 537.0 507 70.2
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.7e-150 536.2 481 73.8
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.3e-149 533.9 507 67.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 6.6e-149 531.6 513 67.1
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 8.6e-149 531.2 501 68.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.3e-148 529.3 504 68.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 9.5e-148 527.7 514 67.5
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 4.0e-146 522.3 494 66.6
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 5.7e-145 518.5 501 66.7
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 9.8e-145 517.7 503 66.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 2.8e-144 516.2 508 68.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.8e-143 513.5 355 85.1
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.4e-143 513.1 437 69.3
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 4.1e-143 512.3 433 68.4
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 5.4e-143 511.9 500 61.8
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.7e-142 509.6 419 70.9
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.1e-140 504.2 434 71.2
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.9e-140 503.4 433 68.4
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 4.3e-140 502.3 446 66.8
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 4.3e-140 502.3 508 65.0
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 5.6e-140 501.9 427 69.3
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.2e-139 500.7 434 68.2
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 2.8e-139 499.6 427 69.3
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.6e-139 499.2 484 64.7
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 6.1e-139 498.4 434 68.0
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.4e-138 497.3 434 67.7
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 8.9e-138 494.6 507 63.7
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.3e-136 490.7 441 65.8
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.1e-135 487.6 431 66.8
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.4e-135 486.5 433 67.0
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 2.4e-135 486.5 386 72.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.5e-134 482.6 550 61.6
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.0e-133 481.1 407 74.4
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 2.3e-133 479.9 415 72.3
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.8e-130 470.3 435 66.4
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.8e-130 470.3 423 63.6
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.1e-130 469.5 506 63.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.9e-130 468.0 530 61.9
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.2e-129 467.6 377 70.3
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 2.6e-129 466.5 437 65.2
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.3e-128 464.2 476 65.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.9e-128 463.0 407 65.8
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.4e-128 461.8 490 62.9
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 4.1e-127 459.1 435 64.1
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.6e-126 457.2 508 62.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.3e-125 454.1 419 64.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.3e-125 454.1 463 60.7
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.5e-124 450.7 356 73.0
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 7.3e-124 448.4 401 67.1
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 9.5e-124 448.0 361 73.4
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 6.2e-123 445.3 472 62.5
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 4.0e-122 442.6 448 60.3
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.5e-121 440.7 405 64.7
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.5e-121 440.7 431 60.3
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.4e-121 439.5 433 63.7
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 8.3e-120 434.9 527 61.5
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.4e-119 433.3 405 64.4
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 9.2e-119 431.4 503 58.8
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.2e-118 431.0 511 58.9
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.6e-118 430.6 518 57.7
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.6e-118 430.6 498 59.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.7e-118 429.9 516 60.5
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 8.6e-117 424.9 498 57.4
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.6e-115 420.6 427 58.5
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 6.2e-115 418.7 477 58.7
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 2.9e-112 409.8 332 67.8
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 2.9e-112 409.8 346 68.2
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 3.8e-112 409.5 443 59.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 6.4e-112 408.7 443 59.8
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 2.4e-111 406.8 638 47.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.2e-111 406.4 421 61.8
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 3.2e-111 406.4 382 65.2
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.2e-110 404.4 390 64.6
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.2e-110 404.4 387 63.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.7e-109 400.6 387 64.1
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.1e-109 399.1 476 57.4
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.1e-107 393.7 509 53.2
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.1e-107 393.7 509 52.8
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.1e-107 393.7 390 61.0
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.6e-107 392.9 289 69.6
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 8.1e-107 391.7 355 67.3
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 2.2e-104 383.6 269 77.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 6.4e-104 382.1 274 74.8
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 3.5e-102 376.3 507 53.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.0e-102 375.6 425 59.5
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 3.6e-99 366.3 506 52.0
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.8e-98 364.0 509 51.3
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-98 364.0 365 60.0
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.0e-97 360.5 430 51.9
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.4e-97 359.8 508 54.7
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 3.4e-97 359.8 506 53.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.2e-96 357.1 508 54.5
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 6.4e-96 355.5 515 51.8
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-93 347.8 507 51.9
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.3e-93 347.8 507 51.9
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 8.7e-93 345.1 308 71.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 8.7e-85 318.5 304 54.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 8.2e-83 312.0 430 48.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 5.0e-80 302.8 509 46.2
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.3e-77 294.7 342 50.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 3.6e-70 270.0 407 50.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.0e-69 268.5 477 41.1
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 5.3e-66 256.1 211 71.6
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.2e-62 245.0 224 58.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.7e-62 243.8 407 43.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.9e-61 240.0 199 60.3
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.1e-58 229.9 334 46.4
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 3.7e-51 206.8 456 35.5
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.8e-50 204.5 369 40.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.0e-48 198.7 197 65.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.5e-39 168.3 344 37.5
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.2e-25 122.1 155 56.8
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.0e-25 121.3 192 50.5
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.0e-24 117.5 74 78.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-23 115.5 192 49.0
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.3e-15 87.4 147 54.4
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 4.0e-13 80.5 293 27.3
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 8.3e-11 72.8 348 26.7
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-09 68.6 95 46.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.6e-09 68.6 95 46.3
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-09 67.8 59 59.3
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 2.5e-07 61.2 36 83.3
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 6.2e-06 56.6 109 39.4
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 8.1e-06 56.2 198 29.8


User provided reference genes

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