Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 0.0e+00 1680.6 907 100.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 0.0e+00 1337.8 929 80.1
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 0.0e+00 1292.3 943 77.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1284.2 931 75.2
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.3e-301 1038.9 1001 59.8
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 5.7e-300 1034.2 987 59.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 5.7e-300 1034.2 959 60.9
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 4.1e-298 1028.1 964 60.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.9e-290 1002.7 1006 57.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 8.6e-288 993.8 936 59.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 9.5e-287 990.3 989 57.8
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 4.7e-286 988.0 974 58.1
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.5e-279 966.5 970 56.8
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.2e-276 956.8 955 57.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.2e-274 948.7 958 56.5
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 6.4e-267 924.5 967 54.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 7.1e-258 894.4 934 55.6
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 4.6e-249 865.1 1003 52.3
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.3e-248 863.6 1002 51.6
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.5e-247 860.1 991 51.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-247 859.8 987 51.0
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.1e-242 844.0 1000 51.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 3.5e-241 839.0 973 51.1
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.8e-240 836.6 992 50.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-239 833.9 981 50.3
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.3e-239 832.4 988 49.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 4.8e-238 828.6 975 50.2
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.8e-237 826.6 1006 50.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.0e-235 820.8 960 50.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 6.5e-235 818.1 978 50.0
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.2e-234 815.8 960 50.4
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.2e-234 815.5 960 50.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.9e-231 806.6 977 49.9
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.3e-231 805.4 949 51.6
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.1e-229 799.3 996 49.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.7e-228 794.7 1041 47.7
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.5e-227 791.2 1037 48.2
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.4e-226 790.4 1036 48.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 3.2e-226 789.3 969 49.2
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.7e-225 786.2 1004 48.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.6e-225 785.8 997 48.1
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 4.7e-225 785.4 980 48.8
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.7e-223 778.5 1041 47.3
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.4e-223 778.1 1064 46.7
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-219 765.8 900 52.6
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 2.1e-217 760.0 1002 47.6
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.7e-217 759.6 962 47.7
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.0e-216 756.1 1068 45.2
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.8e-213 746.9 941 49.5
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.5e-207 727.2 984 47.3
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.2e-206 721.5 874 51.3
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.3e-203 714.1 858 50.0
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 8.5e-203 711.4 1039 43.5
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.0e-199 700.3 1003 44.1
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 3.4e-199 699.5 919 47.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 4.4e-199 699.1 983 44.6
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-197 693.3 569 64.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.0e-195 688.0 985 45.4
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 5.0e-195 685.6 574 63.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.6e-193 680.6 868 48.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 8.0e-193 678.3 936 44.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.0e-192 677.9 953 44.5
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 4.0e-192 676.0 962 44.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 6.8e-192 675.2 962 44.5
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.5e-191 674.1 1122 41.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.0e-191 673.7 942 44.1
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 9.5e-186 654.8 738 51.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.1e-185 653.7 954 43.6
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.6e-185 652.9 814 49.4
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 6.1e-185 652.1 1008 42.0
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 4.0e-184 649.4 1031 42.1
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.0e-184 649.4 932 43.2
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 5.8e-183 645.6 836 48.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.6e-180 637.5 965 44.5
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.8e-176 624.0 966 40.9
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 5.8e-175 619.0 850 46.6
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 7.8e-172 608.6 564 60.1
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.3e-171 607.8 1034 40.2
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.7e-171 607.4 925 41.7
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 3.3e-170 603.2 970 40.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 5.6e-170 602.4 962 42.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 6.8e-168 595.5 1054 40.5
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 9.2e-165 585.1 941 41.8
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 3.1e-160 570.1 1046 37.6
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.9e-160 568.5 937 41.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 8.9e-160 568.5 935 40.3
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.5e-159 567.8 960 38.9
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 4.4e-159 566.2 900 40.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 9.9e-159 565.1 926 40.0
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.4e-157 561.2 1048 37.4
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.2e-157 559.7 945 40.3
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 7.1e-157 558.9 1092 37.0
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.7e-156 557.0 958 39.2
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.3e-155 554.7 924 39.5
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 5.1e-155 552.7 485 62.3
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 8.7e-155 552.0 590 52.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 5.6e-154 549.3 918 40.5
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 7.3e-154 548.9 944 40.5
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 4.7e-153 546.2 931 39.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 8.1e-153 545.4 931 39.6
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-152 544.3 932 39.6
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 2.4e-152 543.9 933 39.3
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.1e-152 543.5 939 40.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.3e-152 542.7 601 54.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.6e-151 540.4 943 40.0
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.7e-150 537.7 942 38.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.6e-148 529.6 953 38.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 6.0e-148 529.3 947 39.0
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.7e-147 527.7 999 38.3
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 8.4e-142 508.8 820 41.8
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.8e-136 491.1 1018 36.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-135 488.0 689 44.7
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-133 481.9 921 36.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 5.9e-119 433.0 795 36.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.7e-116 424.1 731 38.3
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.8e-115 421.4 937 34.0
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 9.7e-114 415.6 336 65.5
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.7e-113 413.7 388 58.5
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 6.3e-113 412.9 815 35.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.4e-112 411.8 551 45.0
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.0e-110 403.3 556 43.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.2e-109 400.6 1075 31.3
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 8.8e-107 392.5 816 34.7
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.0e-106 391.3 747 36.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 2.2e-102 377.9 734 36.8
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 4.7e-100 370.2 348 58.3
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 8.8e-99 365.9 549 41.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 9.1e-96 355.9 678 37.5
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 7.2e-93 346.3 260 69.6
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.8e-91 341.7 1037 29.8
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.2e-86 324.7 1053 28.2
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 2.4e-80 304.7 576 40.1
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 2.3e-78 298.1 1028 28.9
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-77 295.0 1096 25.7
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.5e-74 285.4 286 56.3
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.3e-73 282.3 268 59.0
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 8.6e-70 269.6 621 36.4
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.2e-65 255.0 385 42.1
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.8e-59 235.3 418 40.7
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.5e-58 232.3 244 51.2
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-56 224.6 400 42.0
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 4.1e-56 224.2 402 41.8
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.7e-49 202.2 374 38.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.0e-46 193.0 378 38.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.6e-45 187.2 184 55.4
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 8.7e-38 163.3 519 30.6
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.6e-37 159.8 232 47.0
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.8e-36 157.5 384 31.8
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.5e-34 152.5 206 43.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.1e-32 146.4 187 44.9
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.5e-31 141.4 583 26.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.9e-31 140.2 152 50.7
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 9.6e-29 133.3 193 45.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.6e-28 132.5 355 33.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 4.8e-28 131.0 101 68.3
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-27 129.8 221 42.1
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.6e-26 125.2 231 42.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 9.9e-26 123.2 110 55.5
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.7e-25 122.5 147 48.3
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-21 109.8 176 39.2
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.6e-20 105.9 78 69.2
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 4.8e-20 104.4 154 41.6
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-19 103.2 144 38.2
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 9.0e-19 100.1 52 92.3
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.0e-18 99.0 295 33.6
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.1e-16 90.5 230 37.0
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 2.7e-15 88.6 155 36.8
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.1e-14 84.3 83 47.0
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.5e-13 82.8 129 38.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-13 82.4 92 45.7
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.5e-13 82.0 117 45.3
TPR.G7485 Trifolium pratense HOM05D003625 ORTHO05D411349 2.1e-12 79.0 45 82.2
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.4e-11 76.3 81 49.4
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 5.0e-09 67.8 106 42.5
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 6.5e-09 67.4 96 35.4
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 1.2e-07 63.2 101 41.6
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 4.6e-07 61.2 97 34.0
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 7.9e-07 60.5 190 31.1
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 1.8e-06 59.3 51 72.5
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 8.7e-06 57.0 78 42.3


User provided reference genes

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