Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1469.1 724 100.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1189.1 724 81.1
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1172.9 724 80.4
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1171.8 726 79.8
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1170.6 726 79.9
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1168.3 724 80.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1167.9 726 79.8
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1167.9 726 79.5
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1166.0 726 79.5
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1163.3 725 79.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1156.0 725 79.2
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1154.8 725 79.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1134.8 737 75.6
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 4.2e-301 1037.7 724 69.5
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 3.5e-300 1034.6 710 70.7
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.5e-300 1034.6 724 69.9
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.3e-299 1032.7 722 69.5
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.3e-299 1032.7 724 69.9
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 3.0e-299 1031.6 723 69.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.6e-299 1030.4 722 69.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.9e-298 1028.9 723 69.4
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 2.5e-298 1028.5 707 70.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.2e-297 1026.2 722 69.5
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 2.8e-297 1025.0 725 69.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 726 69.1
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 6.9e-296 1020.4 726 67.9
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 727 67.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.2e-292 1009.6 724 69.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 6.6e-291 1003.8 727 67.8
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 7.3e-290 1000.3 714 68.2
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 9.6e-290 1000.0 718 68.5
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.3e-289 999.6 714 68.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.0e-288 994.6 723 67.1
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.2e-287 993.0 724 67.3
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 4.9e-286 987.6 728 68.3
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.4e-285 985.3 723 67.6
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 5.4e-285 984.2 708 66.9
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 7.9e-284 980.3 707 66.9
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.0e-283 979.9 725 66.6
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 7.4e-282 973.8 724 65.7
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 2.1e-281 972.2 707 66.5
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 2.8e-281 971.8 708 66.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.6e-279 965.3 710 66.2
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 4.5e-279 964.5 710 66.3
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 4.5e-279 964.5 727 65.5
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 5.8e-279 964.1 719 65.9
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.5e-277 958.7 727 64.1
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 4.2e-277 958.0 722 66.1
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 7.1e-277 957.2 725 65.9
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.7e-276 955.3 714 65.1
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 7.9e-276 953.7 711 64.6
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.3e-274 948.3 728 65.0
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 4.3e-274 948.0 730 65.5
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.6e-273 946.0 730 64.9
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.8e-273 944.5 711 64.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 6.2e-273 944.1 730 64.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 3.1e-272 941.8 712 64.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.3e-270 936.4 731 64.0
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 4.2e-269 931.4 702 64.5
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.0e-267 926.8 731 63.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.9e-267 924.9 726 63.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 9.7e-266 920.2 722 62.9
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 4.5e-263 911.4 653 67.5
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 5.9e-263 911.0 718 63.2
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.0e-262 910.2 739 61.4
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.2e-262 909.1 635 69.4
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.8e-262 908.3 724 62.2
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 8.5e-262 907.1 729 61.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 9.4e-261 903.7 709 64.7
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.4e-259 899.8 724 62.2
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.3e-259 899.0 654 67.0
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 5.1e-259 897.9 712 63.5
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.5e-258 896.3 732 62.6
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 7.4e-258 894.0 734 60.4
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 8.2e-257 890.6 732 61.6
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.9e-254 882.1 730 60.4
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.4e-253 879.8 710 61.4
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.6e-250 869.0 637 67.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 4.1e-248 861.7 631 66.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 5.3e-248 861.3 736 58.0
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 6.5e-246 854.4 990 49.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 7.2e-245 850.9 722 60.2
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 7.2e-245 850.9 627 65.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 4.7e-244 848.2 707 59.5
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.8e-243 846.3 591 68.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 2.3e-243 845.9 641 63.3
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 3.0e-243 845.5 733 58.5
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.5e-242 843.2 737 57.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 7.0e-240 834.3 543 72.9
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 9.1e-240 833.9 712 57.9
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.0e-235 818.5 589 66.2
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 7.7e-231 804.3 573 66.5
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.2e-227 791.6 704 57.5
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 9.1e-224 780.8 875 48.8
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.5e-210 736.9 730 54.9
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.5e-210 734.6 984 45.8
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 9.6e-181 637.9 455 67.0
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 4.9e-177 625.5 381 79.3
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 9.3e-176 621.3 488 62.5
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.6e-173 612.1 748 44.4
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 6.9e-155 552.0 703 43.1
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.1e-142 509.2 363 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.3e-140 504.6 649 44.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.8e-134 484.2 452 53.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 2.8e-103 380.6 279 64.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 6.4e-92 342.8 261 65.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.9e-89 333.6 227 73.6
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.1e-80 305.4 292 55.5
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.1e-80 305.4 260 58.8
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.0e-65 254.2 291 47.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.5e-64 251.1 149 75.8
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.8e-63 246.9 168 74.4
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.9e-43 181.8 283 38.2
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.0e-38 162.9 283 36.0
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.3e-36 159.1 209 41.6
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.2e-36 158.3 154 52.6
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.8e-31 141.4 137 51.8
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-29 135.2 89 70.8
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-29 135.2 169 41.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 7.7e-29 133.3 85 72.9
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 5.0e-28 130.6 132 54.5
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-27 129.4 85 71.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.2e-27 127.9 154 42.2
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 2.7e-26 124.8 109 60.6
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 2.8e-23 114.8 109 57.8
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.8e-23 114.0 143 43.4
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 8.2e-23 113.2 109 56.9
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 6.9e-22 110.2 74 71.6
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.0e-21 108.6 107 52.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 7.7e-21 106.7 108 51.9
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-19 102.8 71 67.6
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.6e-18 99.0 622 22.2
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 3.6e-18 97.8 69 68.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 6.7e-17 93.6 91 52.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.6e-16 91.7 66 62.1
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 9.7e-16 89.7 52 78.8
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.3e-15 89.4 57 75.4
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.3e-15 89.4 57 75.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.3e-15 89.4 57 75.4
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.2e-15 88.6 57 75.4
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.8e-15 88.2 58 70.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.1e-14 86.3 81 51.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 5.9e-13 80.5 54 68.5
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 5.0e-12 77.4 129 37.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.0e-12 77.4 70 52.9
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.1e-11 76.3 66 59.1
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.5e-11 75.1 262 26.3
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-11 73.9 108 40.7
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.1e-10 72.0 73 52.1
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.1e-10 72.0 55 60.0
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.8e-09 68.9 54 63.0
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 2.3e-09 68.6 354 19.5
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 4.0e-09 67.8 51 64.7
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.2e-08 66.2 50 68.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.5e-08 65.9 74 50.0
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.4e-06 58.5 51 60.8


User provided reference genes

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