Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 2.3e-78 295.4 143 100.0
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.8e-18 94.4 50 88.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.3e-17 93.6 50 88.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.1e-16 90.5 50 84.0
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.5e-16 89.4 50 80.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.3e-16 89.0 50 80.0
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 4.3e-16 88.6 50 82.0
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 5.6e-16 88.2 50 80.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.2e-15 87.0 50 78.0
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 78.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 78.0
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 78.0
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 78.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 80.0
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.6e-15 86.7 50 76.0
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 80.0
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 80.0
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 78.0
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 78.0
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 80.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.1e-15 86.3 50 80.0
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 2.8e-15 85.9 60 70.0
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 2.8e-15 85.9 50 76.0
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.8e-15 85.9 50 80.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 2.8e-15 85.9 50 80.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.8e-15 85.9 50 74.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.8e-15 85.9 51 74.5
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.8e-15 85.9 50 78.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 3.6e-15 85.5 50 78.0
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 78.0
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 78.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 78.0
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 76.0
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 4.7e-15 85.1 50 78.0
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 76.0
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 74.0
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 76.0
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 76.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 78.0
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 6.2e-15 84.7 50 76.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 8.1e-15 84.3 50 76.0
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 8.1e-15 84.3 84 56.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 8.1e-15 84.3 79 58.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 8.1e-15 84.3 50 76.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 76.0
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 74.0
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 74.0
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 74.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 76.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 76.0
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 74.0
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.1e-14 84.0 50 76.0
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.4e-14 83.6 50 76.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-14 83.6 50 74.0
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.4e-14 83.6 50 74.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.8e-14 83.2 50 76.0
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.8e-14 83.2 50 78.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.8e-14 83.2 50 76.0
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-14 83.2 50 74.0
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 2.3e-14 82.8 50 74.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 2.3e-14 82.8 50 76.0
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.1e-14 82.4 50 76.0
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 3.1e-14 82.4 50 72.0
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.1e-14 82.4 50 74.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.1e-14 82.4 50 72.0
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.0e-14 82.0 50 74.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 5.2e-14 81.6 50 74.0
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 5.2e-14 81.6 50 74.0
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 5.2e-14 81.6 50 70.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 5.2e-14 81.6 50 76.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 6.8e-14 81.3 63 66.7
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 6.8e-14 81.3 50 76.0
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.2e-13 80.5 50 74.0
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.2e-13 80.5 50 72.0
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.5e-13 80.1 50 74.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.5e-13 80.1 50 76.0
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.5e-13 80.1 50 76.0
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.5e-13 80.1 50 72.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.6e-13 79.3 50 72.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.6e-13 79.3 50 74.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 2.6e-13 79.3 50 70.0
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 3.4e-13 79.0 50 72.0
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 4.4e-13 78.6 50 68.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 4.4e-13 78.6 50 72.0
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 7.5e-13 77.8 50 70.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 9.9e-13 77.4 50 70.0
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.2e-12 76.3 50 68.0
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.7e-12 75.5 50 62.0
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.7e-12 75.5 50 68.0
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 4.9e-12 75.1 50 70.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 4.9e-12 75.1 57 68.4
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 6.4e-12 74.7 50 64.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.4e-11 73.6 50 66.0
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 3.2e-11 72.4 50 68.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.4e-11 71.6 50 64.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 5.4e-11 71.6 61 54.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-10 70.5 50 64.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.2e-10 70.5 50 60.0
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-10 70.1 50 58.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.8e-10 67.8 50 58.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.7e-09 66.6 87 44.8
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.0e-09 65.9 50 50.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.6e-09 64.7 50 62.0
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 7.3e-08 61.2 34 79.4
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.8e-07 59.3 36 77.8
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.7e-07 58.5 40 67.5
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 4.7e-07 58.5 42 71.4
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 4.7e-07 58.5 42 71.4
TAR375G0104 Trochodendron aralioides HOM05D001017 ORTHO05D415687 1.4e-06 57.0 35 74.3
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.0e-06 55.5 35 71.4


User provided reference genes

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