Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.0e-65 252.3 129 100.0
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.1e-58 226.9 131 88.5
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.5e-57 224.6 129 87.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.0e-56 221.1 129 84.5
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.0e-56 221.1 129 84.5
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 5.0e-56 221.1 129 84.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 8.5e-56 220.3 129 85.3
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.1e-55 219.9 129 84.5
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.5e-55 218.8 129 82.9
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.5e-55 218.8 129 82.9
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.2e-55 218.4 129 87.6
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 3.2e-55 218.4 129 83.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.2e-55 218.0 126 84.1
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 4.2e-55 218.0 126 84.1
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 4.2e-55 218.0 126 84.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 7.2e-55 217.2 129 85.3
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 9.4e-55 216.9 125 84.0
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.6e-54 216.1 129 82.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 3.6e-54 214.9 129 84.5
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 3.6e-54 214.9 129 82.9
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.6e-54 214.9 129 84.5
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.7e-54 214.5 129 80.6
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.1e-54 214.2 132 82.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.4e-53 213.0 130 83.1
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.8e-53 212.6 129 85.3
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.8e-53 212.6 147 76.2
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-53 212.2 126 82.5
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 3.0e-53 211.8 131 82.4
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.2e-53 211.1 129 82.2
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.2e-53 211.1 129 82.9
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 6.7e-53 210.7 129 85.3
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 8.8e-53 210.3 131 80.9
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.1e-52 209.9 129 81.4
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.1e-52 209.9 129 80.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.5e-52 209.5 127 84.3
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-52 209.1 131 81.7
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.0e-52 209.1 130 83.1
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.0e-52 209.1 129 79.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.6e-52 208.8 130 82.3
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 3.3e-52 208.4 124 83.1
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 4.4e-52 208.0 129 81.4
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 1.7e-51 206.1 129 79.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.2e-51 205.7 130 80.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.2e-51 205.7 131 80.9
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 2.8e-51 205.3 130 81.5
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.8e-51 205.3 129 80.6
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 4.8e-51 204.5 124 80.6
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.1e-50 203.4 124 81.5
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.1e-50 203.4 136 74.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.4e-50 203.0 130 80.8
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.8e-50 202.6 133 78.9
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 2.4e-50 202.2 130 80.0
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 2.4e-50 202.2 129 79.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 7.0e-50 200.7 130 80.0
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 2.0e-49 199.1 124 80.6
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.6e-49 198.7 124 78.2
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.5e-49 198.4 129 79.8
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 3.5e-49 198.4 132 75.8
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.5e-49 198.0 124 80.6
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.5e-49 198.0 129 74.4
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 5.9e-49 197.6 124 79.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-48 196.4 132 74.2
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.7e-48 196.1 130 75.4
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.7e-48 196.1 124 79.8
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 1.7e-48 196.1 124 79.8
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 3.8e-48 194.9 124 78.2
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 5.0e-48 194.5 124 78.2
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 8.5e-48 193.7 125 76.0
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-47 192.6 124 78.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.9e-47 192.6 124 77.4
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.2e-47 191.8 124 78.2
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 3.2e-47 191.8 122 77.9
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 4.2e-47 191.4 124 77.4
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 4.2e-47 191.4 140 71.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.5e-47 191.0 122 77.0
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.6e-46 189.5 167 63.5
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.6e-46 189.5 130 75.4
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.7e-46 188.7 124 77.4
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.7e-46 188.7 129 78.3
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.7e-46 188.7 109 86.2
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.6e-46 188.3 159 68.6
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 3.6e-46 188.3 122 77.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.6e-46 188.3 122 77.0
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.7e-46 188.0 129 73.6
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 6.1e-46 187.6 122 75.4
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 6.1e-46 187.6 122 76.2
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 8.0e-46 187.2 127 75.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.0e-45 186.8 122 77.0
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.4e-45 186.4 132 75.0
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.4e-45 186.4 127 72.4
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.8e-45 186.0 129 72.1
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.3e-45 185.7 131 73.3
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.0e-45 185.3 124 73.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 4.0e-45 184.9 130 73.1
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 5.2e-45 184.5 124 74.2
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 5.2e-45 184.5 109 84.4
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 2.6e-44 182.2 130 72.3
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 2.6e-44 182.2 124 74.2
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 3.3e-44 181.8 122 75.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 9.7e-44 180.3 130 71.5
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.0e-41 172.6 100 84.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.5e-41 171.4 132 66.7
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.5e-41 171.4 95 87.4
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 7.7e-41 170.6 99 82.8
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.3e-40 169.9 129 68.2
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.8e-40 168.3 125 68.8
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 3.8e-40 168.3 120 70.0
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 8.5e-40 167.2 125 68.0
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 8.5e-40 167.2 125 68.0
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 8.5e-40 167.2 125 68.0
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 8.5e-40 167.2 170 54.7
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.5e-39 166.4 115 71.3
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.5e-39 166.4 115 71.3
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.9e-39 166.0 120 69.2
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 4.2e-39 164.9 129 62.8
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 4.2e-39 164.9 129 69.8
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 5.5e-39 164.5 122 68.0
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 7.2e-39 164.1 124 67.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.2e-38 163.3 110 71.8
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 1.6e-38 162.9 120 68.3
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.7e-38 162.2 129 62.0
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 2.7e-38 162.2 120 71.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 6.1e-38 161.0 104 76.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.3e-37 159.1 162 56.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.0e-37 158.3 120 67.5
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.6e-36 155.6 110 67.3
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 9.8e-36 153.7 96 79.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-35 153.3 92 81.5
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.2e-35 152.5 93 81.7
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.7e-35 151.8 129 61.2
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 4.8e-35 151.4 129 59.7
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.4e-34 149.8 118 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 5.4e-34 147.9 109 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 7.0e-34 147.5 109 62.4
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 1.6e-33 146.4 87 81.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.6e-33 146.4 90 80.0
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 5.0e-32 141.4 101 66.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 4.2e-31 138.3 106 64.2
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 9.5e-31 137.1 82 84.1
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.1e-30 136.0 124 60.5
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-29 133.3 124 60.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.8e-29 132.9 81 81.5
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 4.4e-28 128.3 83 78.3
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.1e-26 121.7 78 75.6
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.0e-24 117.1 69 84.1
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.3e-24 116.7 76 75.0
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.7e-24 116.3 63 85.7
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.1e-23 113.6 92 64.1
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 2.5e-23 112.5 115 49.6
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.4e-21 106.7 95 56.8
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 6.8e-21 104.4 61 82.0
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.8e-18 96.3 101 43.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 5.4e-18 94.7 124 46.8
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 5.9e-17 91.3 52 84.6
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 5.0e-16 88.2 89 46.1
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 8.9e-13 77.4 115 39.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.4e-11 71.2 65 58.5
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 6.4e-11 71.2 47 74.5
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.0e-09 66.2 38 84.2
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.0e-08 63.9 93 32.3


User provided reference genes

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