Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 2234.5 1149 100.0
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1564.7 1182 70.8
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1529.2 1153 70.3
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1523.5 1240 67.1
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1503.0 1207 67.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1491.5 1207 66.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1490.3 1160 68.3
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1474.9 1226 65.5
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1474.1 1161 67.8
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1473.4 1161 67.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1451.4 1129 67.9
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1442.6 1035 71.5
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1442.2 1157 67.5
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1431.4 1163 66.0
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1427.9 1213 65.0
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1427.2 1138 67.2
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1424.1 1183 65.8
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1396.7 1157 65.7
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1395.9 1163 64.7
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1382.1 1163 64.4
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1381.7 954 74.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1376.7 1217 62.5
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1360.1 1162 63.9
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1355.5 1145 62.9
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1352.0 1222 61.1
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1352.0 1152 64.0
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1350.1 1156 64.0
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1347.8 1388 57.7
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1347.0 1062 67.1
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1346.3 1160 64.1
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1335.5 1163 63.5
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1330.5 1174 62.4
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1330.1 1183 61.5
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1327.8 1208 61.3
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1322.4 1151 62.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1320.8 1163 62.6
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1319.3 1325 57.2
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1317.8 1163 62.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1317.0 1092 65.2
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1315.8 1205 60.9
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1314.7 1152 62.5
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1314.3 1155 62.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1312.7 1164 61.5
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1308.9 1147 62.2
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1305.0 1175 61.4
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1303.5 1173 61.3
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1303.1 1148 61.4
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1299.3 1154 62.0
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1298.5 873 75.9
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1297.7 1179 60.8
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1293.1 1008 66.5
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1291.6 1032 65.2
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1286.6 1031 65.7
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1286.2 914 70.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1273.1 1238 57.8
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1269.2 1195 58.9
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1257.3 1166 61.4
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1255.0 1221 58.0
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1248.8 938 68.7
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1246.5 1151 60.8
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1245.7 1278 56.7
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1241.1 1229 58.1
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1239.2 1201 57.5
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1234.9 1206 58.5
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1231.5 1209 58.2
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1231.5 1095 61.7
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1217.6 1228 57.0
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1214.1 1197 57.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1212.6 1191 57.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1211.8 998 65.4
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1209.1 875 72.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1208.4 1196 56.9
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1208.0 1209 56.9
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 814 74.0
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1140.6 942 65.5
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1130.5 1023 59.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1129.4 835 71.9
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1125.2 983 63.3
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 1104.4 999 61.7
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 0.0e+00 1104.0 816 69.4
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 0.0e+00 1082.8 1044 57.4
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1078.9 816 69.2
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 7.8e-310 1067.4 1156 55.3
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.3e-304 1050.0 868 66.0
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.9e-287 993.0 1156 50.6
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 7.1e-279 964.5 795 66.7
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.9e-276 956.4 1040 51.5
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 7.1e-271 937.9 1114 49.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.3e-271 937.6 971 53.5
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.1e-270 936.4 1037 50.7
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 6.6e-269 931.4 692 68.5
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.4e-268 927.9 690 68.3
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 7.6e-249 864.8 629 72.2
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 4.6e-246 855.5 595 73.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.3e-244 849.0 865 54.0
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 5.5e-239 832.0 614 69.9
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.2e-239 831.6 939 50.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.0e-237 827.8 1064 49.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 4.0e-221 772.7 715 59.7
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.3e-216 757.7 497 78.3
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.0e-208 731.5 721 57.7
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.3e-197 693.7 504 69.6
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-166 591.7 416 71.6
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 6.4e-163 579.3 739 47.6
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-162 578.2 755 44.9
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 3.4e-148 530.4 402 69.7
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 7.1e-138 496.1 421 63.2
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.5e-127 461.1 348 67.8
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 5.9e-124 449.9 435 59.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.7e-110 405.2 374 61.5
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 3.7e-86 324.3 395 44.6
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.1e-69 269.6 228 64.0
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.4e-69 268.5 315 52.4
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-66 258.8 526 35.9
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 3.6e-65 254.6 708 30.9
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.0e-63 248.8 344 46.8
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 5.8e-63 247.3 159 75.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.9e-61 242.3 200 64.0
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.2e-61 240.0 260 55.0
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.3e-58 231.1 264 49.2
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 7.3e-58 230.3 187 63.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-57 229.2 265 49.1
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 5.2e-56 224.2 166 67.5
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 2.2e-54 218.8 165 69.1
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 4.6e-52 211.1 443 39.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.8e-48 199.1 741 27.4
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.8e-47 194.1 147 65.3
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.9e-45 189.1 156 61.5
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 2.4e-45 188.7 199 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.7e-44 185.3 858 24.7
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.0e-44 184.1 677 27.9
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.9e-43 181.4 723 25.2
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.9e-43 181.4 136 64.0
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.9e-42 179.1 718 25.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-41 176.0 768 24.5
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.6e-41 176.0 173 57.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.7e-38 166.0 117 71.8
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.8e-38 164.9 477 30.4
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.4e-37 162.2 133 61.7
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 9.6e-34 150.2 853 24.5
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.4e-32 145.6 157 51.0
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.0e-32 144.8 824 22.8
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-31 143.3 105 70.5
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.2e-29 135.2 748 24.1
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 8.7e-27 127.1 515 25.0
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 5.6e-26 124.4 114 61.4
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.3e-25 123.2 284 37.0
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 4.8e-25 121.3 131 50.4
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-24 119.8 73 78.1
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-22 113.2 296 30.7
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.9e-22 112.1 105 52.4
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 4.9e-22 111.3 82 68.3
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.8e-19 102.8 69 78.3
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.8e-19 102.8 741 26.3
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.4e-16 92.4 261 27.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.5e-14 84.0 434 23.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.2e-13 82.0 129 38.0
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.3e-10 71.6 99 42.4
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 4.3e-10 71.6 140 36.4
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 2.8e-09 68.9 97 44.3
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 9.1e-08 63.9 86 44.2
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 9.1e-08 63.9 73 53.4
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 3.4e-07 62.0 113 39.8
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-06 59.7 204 30.4
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.9e-06 58.9 69 40.6
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 6.5e-06 57.8 87 41.4


User provided reference genes

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