Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.2e-123 445.7 226 100.0
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 5.5e-10 68.9 40 85.0
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.6e-09 67.4 40 85.0
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-09 67.4 39 87.2
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-09 67.4 39 87.2
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-09 67.4 39 87.2
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.6e-09 67.4 39 87.2
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.6e-09 67.4 42 81.0
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.6e-09 67.4 42 81.0
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.1e-09 67.0 39 84.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 2.1e-09 67.0 39 84.6
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 2.1e-09 67.0 40 82.5
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.1e-09 67.0 39 84.6
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 2.1e-09 67.0 39 84.6
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 2.1e-09 67.0 39 84.6
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.7e-09 66.6 40 82.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.7e-09 66.6 37 89.2
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 2.7e-09 66.6 37 89.2
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.7e-09 66.6 40 82.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 82.1
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 3.6e-09 66.2 37 86.5
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 82.1
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 82.1
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 3.6e-09 66.2 39 84.6
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 4.7e-09 65.9 40 80.0
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.7e-09 65.9 42 78.6
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 6.1e-09 65.5 40 80.0
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.1e-09 65.5 37 86.5
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.1e-09 65.5 37 86.5
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 6.1e-09 65.5 39 79.5
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 6.1e-09 65.5 39 82.1
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 6.1e-09 65.5 39 82.1
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.0e-09 65.1 40 77.5
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.0e-09 65.1 40 77.5
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.0e-09 65.1 40 77.5
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 79.5
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 8.0e-09 65.1 40 82.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 8.0e-09 65.1 39 82.1
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.0e-08 64.7 39 79.5
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.0e-08 64.7 39 79.5
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.4e-08 64.3 39 76.9
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.4e-08 64.3 33 93.9
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.4e-08 64.3 33 93.9
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.4e-08 64.3 33 93.9
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.4e-08 64.3 33 93.9
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.4e-08 64.3 33 93.9
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.8e-08 63.9 39 79.5
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 2.3e-08 63.5 39 79.5
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.3e-08 63.5 39 79.5
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.3e-08 63.5 39 79.5
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.3e-08 63.5 39 79.5
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 3.0e-08 63.2 39 79.5
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 3.0e-08 63.2 56 58.9
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 3.0e-08 63.2 33 90.9
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 3.0e-08 63.2 33 90.9
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 3.0e-08 63.2 33 90.9
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 3.0e-08 63.2 39 79.5
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 3.0e-08 63.2 33 90.9
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 4.0e-08 62.8 39 76.9
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 4.0e-08 62.8 39 74.4
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 5.2e-08 62.4 35 88.6
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 6.8e-08 62.0 39 76.9
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 6.8e-08 62.0 39 76.9
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 8.8e-08 61.6 33 87.9
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 8.8e-08 61.6 33 87.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 8.8e-08 61.6 33 87.9
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 8.8e-08 61.6 37 81.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-07 61.2 33 84.8
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-07 61.2 33 84.8
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.2e-07 61.2 35 85.7
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.2e-07 61.2 35 85.7
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.2e-07 61.2 35 85.7
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.2e-07 61.2 51 68.6
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.2e-07 61.2 35 85.7
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 2.0e-07 60.5 39 76.9
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 3.4e-07 59.7 33 81.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.4e-07 59.7 33 81.8
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-07 59.3 33 81.8
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 7.5e-07 58.5 35 80.0
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.7e-06 57.4 35 77.1


User provided reference genes

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