Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.2e-174 615.5 309 100.0
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 4.1e-133 478.4 309 78.6
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.5e-98 363.6 305 61.0
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 2.4e-96 356.3 306 60.8
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 1.9e-93 346.7 308 60.1
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 3.2e-93 345.9 308 61.0
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 4.2e-93 345.5 311 60.5
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.3e-91 340.5 306 59.2
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 3.1e-88 329.3 306 58.2
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 5.3e-88 328.6 309 57.9
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 5.3e-88 328.6 305 58.0
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 6.9e-88 328.2 309 58.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.5e-87 327.0 310 57.4
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 5.9e-87 325.1 314 56.7
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.3e-86 323.9 305 58.0
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.7e-86 323.6 306 57.2
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 9.4e-85 317.8 284 57.7
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.2e-84 317.4 293 54.9
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.2e-84 317.4 305 56.4
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.6e-84 315.8 305 57.0
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.0e-83 314.3 236 63.6
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.7e-83 311.6 309 54.7
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 5.7e-82 308.5 278 60.1
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 7.4e-82 308.1 306 55.6
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.7e-81 307.0 307 53.7
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.7e-81 305.8 302 54.6
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 9.1e-80 301.2 306 54.9
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 1.5e-79 300.4 303 53.8
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 5.9e-79 298.5 302 56.0
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 7.7e-79 298.1 304 52.6
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.0e-78 297.7 318 51.6
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.7e-78 297.0 277 56.0
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.7e-78 297.0 304 52.3
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.4e-77 293.9 308 51.9
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 2.5e-77 293.1 238 59.2
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 3.2e-77 292.7 307 52.1
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 4.2e-77 292.4 305 51.8
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 5.5e-77 292.0 310 51.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 7.2e-77 291.6 310 51.3
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 9.4e-77 291.2 310 50.3
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 4.7e-76 288.9 308 51.6
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 2.3e-75 286.6 307 53.1
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 6.7e-75 285.0 303 50.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 2.2e-73 280.0 314 50.6
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 3.7e-73 279.3 301 50.8
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 7.0e-72 275.0 279 52.3
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 9.1e-72 274.6 305 48.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 9.1e-72 274.6 315 47.9
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.0e-70 271.2 305 49.5
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 3.8e-70 269.2 242 55.8
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.9e-69 266.9 295 47.8
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.5e-69 266.5 295 47.8
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.1e-68 263.5 287 50.2
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 6.1e-68 261.9 301 50.2
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 3.3e-66 256.1 259 52.5
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.4e-66 255.8 304 48.4
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 7.5e-66 255.0 308 49.4
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 9.7e-66 254.6 304 47.7
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.3e-65 254.2 305 45.9
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 2.2e-65 253.4 304 47.0
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 3.7e-65 252.7 308 48.7
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 6.3e-65 251.9 266 52.6
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.1e-64 251.1 304 46.7
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 1.1e-64 251.1 305 45.9
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.1e-64 251.1 318 46.2
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 1.8e-64 250.4 304 47.0
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 7.0e-64 248.4 314 45.2
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 2.7e-63 246.5 303 46.2
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.3e-62 244.2 306 45.8
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.7e-62 243.8 289 48.1
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.1e-61 241.1 303 46.9
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.1e-61 241.1 304 46.4
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.5e-61 240.0 289 48.4
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 2.1e-60 236.9 312 43.9
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.3e-59 233.4 305 45.9
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.0e-59 233.0 243 50.2
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.0e-59 233.0 307 41.7
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.2e-58 231.1 239 51.0
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 7.5e-58 228.4 303 44.9
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.7e-57 227.3 304 45.4
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.2e-57 226.9 297 45.8
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.8e-56 223.8 240 53.3
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.8e-56 223.8 218 53.2
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.8e-56 223.8 303 43.2
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 2.4e-56 223.4 278 46.8
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 7.0e-56 221.9 310 42.9
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.6e-55 220.7 308 43.8
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.7e-55 219.9 305 41.0
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 4.5e-55 219.2 226 52.2
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 5.9e-55 218.8 249 51.4
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 2.2e-54 216.9 308 43.2
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 2.2e-54 216.9 226 51.8
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.1e-53 214.5 280 44.6
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 8.0e-52 208.4 286 43.4
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.8e-51 207.2 263 44.9
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.3e-51 206.8 310 41.3
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 5.7e-50 202.2 287 43.2
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.8e-49 199.9 280 43.6
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 4.9e-49 199.1 137 71.5
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 5.9e-47 192.2 275 40.0
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 5.9e-47 192.2 224 44.6
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.0e-46 191.4 311 37.9
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 6.1e-44 182.2 302 39.4
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 4.9e-41 172.6 246 39.0
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 7.0e-40 168.7 190 49.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 2.3e-38 163.7 241 42.3
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.3e-37 159.8 325 36.6
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.2e-34 151.4 311 37.0
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 7.5e-34 148.7 134 53.7
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 1.3e-33 147.9 214 42.1
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.7e-33 147.5 309 32.0
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.2e-28 129.0 200 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 2.3e-27 127.1 226 33.6
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 2.0e-26 124.0 106 57.5
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.6e-26 123.6 108 57.4
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.5e-26 122.1 116 62.9
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.2e-25 120.6 233 34.8
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.2e-24 116.7 275 33.5
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.7e-22 110.9 301 31.6
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.5e-21 107.1 97 56.7
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 6.2e-20 102.4 63 79.4
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 6.2e-20 102.4 63 79.4
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.4e-19 101.3 212 33.0
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 6.8e-19 99.0 132 38.6
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.1e-16 91.7 94 50.0
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 6.6e-14 82.4 59 62.7
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 3.2e-08 63.5 111 40.5
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 9.3e-08 62.0 141 30.5


User provided reference genes

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